Query         gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 578
No_of_seqs    170 out of 529
Neff          8.2 
Searched_HMMs 33803
Date          Wed Jun  1 23:19:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781208.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2eqo_A TNF receptor-associate  23.2      10  0.0003   15.7  -1.5   19   42-60     27-45  (140)
  2 >3dw8_B Serine/threonine-prote  20.6      37  0.0011   11.8   1.7   11  481-491    68-78  (151)
  3 >3hav_A Aminoglycoside phospho  19.2      39  0.0012   11.6   3.0   29  118-146     1-31  (73)
  4 >2hu5_A Acylamino-acid-releasi  17.8      42  0.0012   11.4   5.2   24  392-415     4-27  (129)
  5 >2g3w_A YAEQ protein, hypothet  16.4      45  0.0013   11.2   2.5   25   23-47     33-57  (92)
  6 >2f82_A HMG-COA synthase; HMGS  15.5      47  0.0014   11.0   0.8   23   38-60      2-25  (36)
  7 >1wb9_A DNA mismatch repair pr  15.2      48  0.0014   11.0   0.7   17  351-367    24-40  (123)
  8 >1ewq_A DNA mismatch repair pr  15.2      48  0.0014   11.0   0.7   17  351-367    27-43  (125)
  9 >1ohe_A CDC14B, CDC14B2 phosph  14.9      49  0.0015   10.9   2.1   38  330-367     5-48  (159)
 10 >2z2n_A Virginiamycin B lyase;  14.9      49  0.0015   10.9   6.2   60   76-143    12-71  (84)

No 1  
>>2eqo_A TNF receptor-associated factor 3-interacting protein 1; STN_TRAF3IP1_ND domain, interleukin 13 receptor alpha 1-binding protein-1 [HOMO sapiens]; NMR {Homo sapiens} (A:)
Probab=23.16  E-value=10  Score=15.70  Aligned_cols=19  Identities=26%  Similarity=0.287  Sum_probs=14.1

Q ss_pred             EEEECCCEECCCCCEEEEC
Q ss_conf             8341071427720210000
Q gi|254781208|r   42 PLRYGPLVSMPLMQEYRDC   60 (578)
Q Consensus        42 ~~p~GGl~rRPGt~fv~~l   60 (578)
                      |-.+.-|-+|||+||+..+
T Consensus        27 P~LTeKLL~kPPFRFLhDI   45 (140)
T 2eqo_A           27 PPLTEKLLSKPPFRYLHDI   45 (140)
T ss_dssp             SCCCTTTTTSCCHHHHHHH
T ss_pred             CCCCHHHHCCCCHHHHHHH
T ss_conf             9778888359981899999


No 2  
>>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform...; PP2A, holoenzyme, PR55, acetylation, polymorphism, WD repeat, cytoplasm, hydrolase, iron, manganese, metal- binding, methylation; HET: ADD; 2.85A {Homo sapiens} (B:26-176)
Probab=20.59  E-value=37  Score=11.81  Aligned_cols=11  Identities=9%  Similarity=0.323  Sum_probs=3.6

Q ss_pred             CCCEEEEEEEC
Q ss_conf             88636899607
Q gi|254781208|r  481 NQRILQLVYQE  491 (578)
Q Consensus       481 ~~~v~~~a~~~  491 (578)
                      +..|-.+.|.+
T Consensus        68 EEKINkIkWl~   78 (151)
T 3dw8_B           68 EEKINKIRWLP   78 (151)
T ss_dssp             CCCCCEEEECC
T ss_pred             CCCEEEEEEEC
T ss_conf             89888999835


No 3  
>>3hav_A Aminoglycoside phosphotransferase; streptomycin, ATP, antibiotic resistance; HET: ATP SRY; 2.45A {Enterococcus faecium} PDB: 3ham_A* (A:18-90)
Probab=19.20  E-value=39  Score=11.61  Aligned_cols=29  Identities=10%  Similarity=0.020  Sum_probs=22.2

Q ss_pred             CEEEEEEEECC--EEEEECCCCCEEEEEEEC
Q ss_conf             00279998355--899982884227898521
Q gi|254781208|r  118 NKSLEYAVFGS--TAVFVHKDHPPHHLLYIQ  146 (578)
Q Consensus       118 l~~l~~~QsaD--~~fI~h~~~~p~~L~R~s  146 (578)
                      +++|+|..++|  -+|+||..|.+..-.|-+
T Consensus         1 inelrylssgddsdtflcneqyvvkvpkrds   31 (73)
T 3hav_A            1 INELRYLSSGDDSDTFLCNEQYVVKVPKRDS   31 (73)
T ss_dssp             CSCEEEEEECSSEEEEEETTTEEEEEESSHH
T ss_pred             CEEEEECCCCCCCCEEEECCEEEEEECCCCC
T ss_conf             0367877999743579999999999648763


No 4  
>>2hu5_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase, beta-propeller, enzyme-inhibitor complex; HET: PHE; 2.00A {Aeropyrum pernix} (A:23-151)
Probab=17.77  E-value=42  Score=11.40  Aligned_cols=24  Identities=8%  Similarity=-0.068  Sum_probs=13.4

Q ss_pred             EEEEEEECCCEEEEEECCCEEEEC
Q ss_conf             268787718589999468179974
Q gi|254781208|r  392 TIHWMHPFGEGVLVGCDTSLWLLS  415 (578)
Q Consensus       392 ~i~~~~~~~~~l~~~t~~~~~~~~  415 (578)
                      .++-.+..+.+++++++.++--++
T Consensus         4 ~~~~~~~~d~lv~~~tseG~vni~   27 (129)
T 2hu5_A            4 SLQGVVDGDKLLVVGFSEGSVNAY   27 (129)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEE
T ss_pred             CCCCEECCCEEEEEECCCCCEEEE
T ss_conf             656505797799998479978999


No 5  
>>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} (A:53-135,A:174-182)
Probab=16.41  E-value=45  Score=11.18  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             CCCCHHHHHHHHHEEEEEEEEEECC
Q ss_conf             4335899876884153149834107
Q gi|254781208|r   23 SRKDLSLHAQGVAKSRNLIPLRYGP   47 (578)
Q Consensus        23 gR~D~~ky~~g~~~~~N~i~~p~GG   47 (578)
                      |++|-.|...+|..++.+++..+|+
T Consensus        33 G~Pdekrl~KA~~rA~~V~vy~Yg~   57 (92)
T 2g3w_A           33 GQPDESRVRKACNRSREAVVIGYGG   57 (92)
T ss_dssp             SCCCHHHHHHHHHHSSEEEEEECCT
T ss_pred             CCCCHHHHHHHHCCCCCEEEEEECC
T ss_conf             8987899999752587289999689


No 6  
>>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* (A:415-450)
Probab=15.54  E-value=47  Score=11.03  Aligned_cols=23  Identities=13%  Similarity=0.252  Sum_probs=15.0

Q ss_pred             EEEEEEEECCC-EECCCCCEEEEC
Q ss_conf             31498341071-427720210000
Q gi|254781208|r   38 RNLIPLRYGPL-VSMPLMQEYRDC   60 (578)
Q Consensus        38 ~N~i~~p~GGl-~rRPGt~fv~~l   60 (578)
                      .||.|.++|-+ .-+|||-|+..+
T Consensus         2 k~f~P~~~Gs~~~L~PGTyYL~~V   25 (36)
T 2f82_A            2 KEFVTSKEGILDLLAPGTYYLKEV   25 (36)
T ss_dssp             CSEECCCTTTGGGSCTTCEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             778679987513356654785033


No 7  
>>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, complete proteome, DNA binding, DNA repair; HET: DNA ADP; 2.10A {Escherichia coli} (A:1-123)
Probab=15.23  E-value=48  Score=10.98  Aligned_cols=17  Identities=18%  Similarity=0.372  Sum_probs=8.5

Q ss_pred             CCCEEEEECCCCHHHCC
Q ss_conf             86379983147622000
Q gi|254781208|r  351 DELSVYLSSFGAFYDFS  367 (578)
Q Consensus       351 ~P~~I~~S~~gd~~nF~  367 (578)
                      .|+.|.+-|.|+|+.++
T Consensus        24 ~~d~ill~rvG~FYE~y   40 (123)
T 1wb9_A           24 HPEILLFYRMGDFYTLF   40 (123)
T ss_dssp             STTSEEEEEETTEEEEE
T ss_pred             CCCEEEEEECCCEEEEC
T ss_conf             89989999737268984


No 8  
>>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} (A:1-125)
Probab=15.17  E-value=48  Score=10.97  Aligned_cols=17  Identities=24%  Similarity=0.282  Sum_probs=8.9

Q ss_pred             CCCEEEEECCCCHHHCC
Q ss_conf             86379983147622000
Q gi|254781208|r  351 DELSVYLSSFGAFYDFS  367 (578)
Q Consensus       351 ~P~~I~~S~~gd~~nF~  367 (578)
                      .|++|.+-|.|+|+.++
T Consensus        27 ~pd~vll~rvG~FYE~y   43 (125)
T 1ewq_A           27 YPDYLLLFQVGDFYECF   43 (125)
T ss_dssp             CTTSEEEEEETTEEEEE
T ss_pred             CCCEEEEEECCCEEEEC
T ss_conf             89979999858368983


No 9  
>>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} (A:1-159)
Probab=14.95  E-value=49  Score=10.93  Aligned_cols=38  Identities=16%  Similarity=0.062  Sum_probs=26.6

Q ss_pred             CCCCEEEEEECCEEEEECCCCCC----CEEEEECCCC--HHHCC
Q ss_conf             89820679995828996477786----3799831476--22000
Q gi|254781208|r  330 EGYPSHVTFHNNRLLFSGSKGDE----LSVYLSSFGA--FYDFS  367 (578)
Q Consensus       330 ~GyP~~v~F~~nRL~f~gt~~~P----~~I~~S~~gd--~~nF~  367 (578)
                      +.....+.|-++||.|+.-.+.|    ++.++|.=.+  |+||.
T Consensus         5 ~~~~~~~e~i~dRLYf~~~~~~p~~~~~~~yF~iD~~l~Y~~F~   48 (159)
T 1ohe_A            5 DPQDDVYLDITDRLCFAILYSRPKSASNVHYFSIDNELEYENFY   48 (159)
T ss_dssp             CGGGCEEEESSSSEEEEECSSCCCCBTTEEEEECTTTSCCCCSS
T ss_pred             CCCCCCEEEECCCEEEEECCCCCCCCCCEEEEEECCCEEECCCC
T ss_conf             76655227637958999746789999872799816834674654


No 10 
>>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, enzyme mechanism, virginiamycin B hydrolase, streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* (A:182-265)
Probab=14.88  E-value=49  Score=10.92  Aligned_cols=60  Identities=5%  Similarity=-0.154  Sum_probs=31.9

Q ss_pred             CCCEEEEEEECCEEEEEECCCCEEEEECCCEEEEEECCCCCCCEEEEEEEECCEEEEECCCCCEEEEE
Q ss_conf             99659999979969999818827995036403677225665000279998355899982884227898
Q gi|254781208|r   76 DGGYALLVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKSLEYAVFGSTAVFVHKDHPPHHLL  143 (578)
Q Consensus        76 ~~e~Yil~f~~~~irV~~~~g~~~~~~~~~~~~~~tpy~~~~l~~l~~~QsaD~~fI~h~~~~p~~L~  143 (578)
                      +++-|+....+++|++|+.+|........        -.......|.+...+++.+..+.++.++++.
T Consensus        12 ~g~i~v~d~~~~~I~~~~~~g~~~~~~~~--------~~~~~P~gia~d~~G~i~v~d~~~~~I~~~~   71 (84)
T 2z2n_A           12 DDALWFVEIIGNKIGRITTSGEITEFKIP--------TPNARPHAITAGAGIDLWFTEWGANKIGRLT   71 (84)
T ss_dssp             TSSEEEEETTTTEEEEECTTCCEEEEECS--------STTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEECCCCEEEEEECCCCEEEEEEE--------CCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf             88589986579999999076623676321--------1577126799999981999981599899994


Done!