Query gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 578 No_of_seqs 170 out of 529 Neff 8.2 Searched_HMMs 33803 Date Wed Jun 1 23:19:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781208.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2eqo_A TNF receptor-associate 23.2 10 0.0003 15.7 -1.5 19 42-60 27-45 (140) 2 >3dw8_B Serine/threonine-prote 20.6 37 0.0011 11.8 1.7 11 481-491 68-78 (151) 3 >3hav_A Aminoglycoside phospho 19.2 39 0.0012 11.6 3.0 29 118-146 1-31 (73) 4 >2hu5_A Acylamino-acid-releasi 17.8 42 0.0012 11.4 5.2 24 392-415 4-27 (129) 5 >2g3w_A YAEQ protein, hypothet 16.4 45 0.0013 11.2 2.5 25 23-47 33-57 (92) 6 >2f82_A HMG-COA synthase; HMGS 15.5 47 0.0014 11.0 0.8 23 38-60 2-25 (36) 7 >1wb9_A DNA mismatch repair pr 15.2 48 0.0014 11.0 0.7 17 351-367 24-40 (123) 8 >1ewq_A DNA mismatch repair pr 15.2 48 0.0014 11.0 0.7 17 351-367 27-43 (125) 9 >1ohe_A CDC14B, CDC14B2 phosph 14.9 49 0.0015 10.9 2.1 38 330-367 5-48 (159) 10 >2z2n_A Virginiamycin B lyase; 14.9 49 0.0015 10.9 6.2 60 76-143 12-71 (84) No 1 >>2eqo_A TNF receptor-associated factor 3-interacting protein 1; STN_TRAF3IP1_ND domain, interleukin 13 receptor alpha 1-binding protein-1 [HOMO sapiens]; NMR {Homo sapiens} (A:) Probab=23.16 E-value=10 Score=15.70 Aligned_cols=19 Identities=26% Similarity=0.287 Sum_probs=14.1 Q ss_pred EEEECCCEECCCCCEEEEC Q ss_conf 8341071427720210000 Q gi|254781208|r 42 PLRYGPLVSMPLMQEYRDC 60 (578) Q Consensus 42 ~~p~GGl~rRPGt~fv~~l 60 (578) |-.+.-|-+|||+||+..+ T Consensus 27 P~LTeKLL~kPPFRFLhDI 45 (140) T 2eqo_A 27 PPLTEKLLSKPPFRYLHDI 45 (140) T ss_dssp SCCCTTTTTSCCHHHHHHH T ss_pred CCCCHHHHCCCCHHHHHHH T ss_conf 9778888359981899999 No 2 >>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform...; PP2A, holoenzyme, PR55, acetylation, polymorphism, WD repeat, cytoplasm, hydrolase, iron, manganese, metal- binding, methylation; HET: ADD; 2.85A {Homo sapiens} (B:26-176) Probab=20.59 E-value=37 Score=11.81 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=3.6 Q ss_pred CCCEEEEEEEC Q ss_conf 88636899607 Q gi|254781208|r 481 NQRILQLVYQE 491 (578) Q Consensus 481 ~~~v~~~a~~~ 491 (578) +..|-.+.|.+ T Consensus 68 EEKINkIkWl~ 78 (151) T 3dw8_B 68 EEKINKIRWLP 78 (151) T ss_dssp CCCCCEEEECC T ss_pred CCCEEEEEEEC T ss_conf 89888999835 No 3 >>3hav_A Aminoglycoside phosphotransferase; streptomycin, ATP, antibiotic resistance; HET: ATP SRY; 2.45A {Enterococcus faecium} PDB: 3ham_A* (A:18-90) Probab=19.20 E-value=39 Score=11.61 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=22.2 Q ss_pred CEEEEEEEECC--EEEEECCCCCEEEEEEEC Q ss_conf 00279998355--899982884227898521 Q gi|254781208|r 118 NKSLEYAVFGS--TAVFVHKDHPPHHLLYIQ 146 (578) Q Consensus 118 l~~l~~~QsaD--~~fI~h~~~~p~~L~R~s 146 (578) +++|+|..++| -+|+||..|.+..-.|-+ T Consensus 1 inelrylssgddsdtflcneqyvvkvpkrds 31 (73) T 3hav_A 1 INELRYLSSGDDSDTFLCNEQYVVKVPKRDS 31 (73) T ss_dssp CSCEEEEEECSSEEEEEETTTEEEEEESSHH T ss_pred CEEEEECCCCCCCCEEEECCEEEEEECCCCC T ss_conf 0367877999743579999999999648763 No 4 >>2hu5_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase, beta-propeller, enzyme-inhibitor complex; HET: PHE; 2.00A {Aeropyrum pernix} (A:23-151) Probab=17.77 E-value=42 Score=11.40 Aligned_cols=24 Identities=8% Similarity=-0.068 Sum_probs=13.4 Q ss_pred EEEEEEECCCEEEEEECCCEEEEC Q ss_conf 268787718589999468179974 Q gi|254781208|r 392 TIHWMHPFGEGVLVGCDTSLWLLS 415 (578) Q Consensus 392 ~i~~~~~~~~~l~~~t~~~~~~~~ 415 (578) .++-.+..+.+++++++.++--++ T Consensus 4 ~~~~~~~~d~lv~~~tseG~vni~ 27 (129) T 2hu5_A 4 SLQGVVDGDKLLVVGFSEGSVNAY 27 (129) T ss_dssp EEEEEETTTEEEEEEEETTEEEEE T ss_pred CCCCEECCCEEEEEECCCCCEEEE T ss_conf 656505797799998479978999 No 5 >>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} (A:53-135,A:174-182) Probab=16.41 E-value=45 Score=11.18 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.6 Q ss_pred CCCCHHHHHHHHHEEEEEEEEEECC Q ss_conf 4335899876884153149834107 Q gi|254781208|r 23 SRKDLSLHAQGVAKSRNLIPLRYGP 47 (578) Q Consensus 23 gR~D~~ky~~g~~~~~N~i~~p~GG 47 (578) |++|-.|...+|..++.+++..+|+ T Consensus 33 G~Pdekrl~KA~~rA~~V~vy~Yg~ 57 (92) T 2g3w_A 33 GQPDESRVRKACNRSREAVVIGYGG 57 (92) T ss_dssp SCCCHHHHHHHHHHSSEEEEEECCT T ss_pred CCCCHHHHHHHHCCCCCEEEEEECC T ss_conf 8987899999752587289999689 No 6 >>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* (A:415-450) Probab=15.54 E-value=47 Score=11.03 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=15.0 Q ss_pred EEEEEEEECCC-EECCCCCEEEEC Q ss_conf 31498341071-427720210000 Q gi|254781208|r 38 RNLIPLRYGPL-VSMPLMQEYRDC 60 (578) Q Consensus 38 ~N~i~~p~GGl-~rRPGt~fv~~l 60 (578) .||.|.++|-+ .-+|||-|+..+ T Consensus 2 k~f~P~~~Gs~~~L~PGTyYL~~V 25 (36) T 2f82_A 2 KEFVTSKEGILDLLAPGTYYLKEV 25 (36) T ss_dssp CSEECCCTTTGGGSCTTCEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCEEEEEE T ss_conf 778679987513356654785033 No 7 >>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, complete proteome, DNA binding, DNA repair; HET: DNA ADP; 2.10A {Escherichia coli} (A:1-123) Probab=15.23 E-value=48 Score=10.98 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=8.5 Q ss_pred CCCEEEEECCCCHHHCC Q ss_conf 86379983147622000 Q gi|254781208|r 351 DELSVYLSSFGAFYDFS 367 (578) Q Consensus 351 ~P~~I~~S~~gd~~nF~ 367 (578) .|+.|.+-|.|+|+.++ T Consensus 24 ~~d~ill~rvG~FYE~y 40 (123) T 1wb9_A 24 HPEILLFYRMGDFYTLF 40 (123) T ss_dssp STTSEEEEEETTEEEEE T ss_pred CCCEEEEEECCCEEEEC T ss_conf 89989999737268984 No 8 >>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} (A:1-125) Probab=15.17 E-value=48 Score=10.97 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=8.9 Q ss_pred CCCEEEEECCCCHHHCC Q ss_conf 86379983147622000 Q gi|254781208|r 351 DELSVYLSSFGAFYDFS 367 (578) Q Consensus 351 ~P~~I~~S~~gd~~nF~ 367 (578) .|++|.+-|.|+|+.++ T Consensus 27 ~pd~vll~rvG~FYE~y 43 (125) T 1ewq_A 27 YPDYLLLFQVGDFYECF 43 (125) T ss_dssp CTTSEEEEEETTEEEEE T ss_pred CCCEEEEEECCCEEEEC T ss_conf 89979999858368983 No 9 >>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} (A:1-159) Probab=14.95 E-value=49 Score=10.93 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=26.6 Q ss_pred CCCCEEEEEECCEEEEECCCCCC----CEEEEECCCC--HHHCC Q ss_conf 89820679995828996477786----3799831476--22000 Q gi|254781208|r 330 EGYPSHVTFHNNRLLFSGSKGDE----LSVYLSSFGA--FYDFS 367 (578) Q Consensus 330 ~GyP~~v~F~~nRL~f~gt~~~P----~~I~~S~~gd--~~nF~ 367 (578) +.....+.|-++||.|+.-.+.| ++.++|.=.+ |+||. T Consensus 5 ~~~~~~~e~i~dRLYf~~~~~~p~~~~~~~yF~iD~~l~Y~~F~ 48 (159) T 1ohe_A 5 DPQDDVYLDITDRLCFAILYSRPKSASNVHYFSIDNELEYENFY 48 (159) T ss_dssp CGGGCEEEESSSSEEEEECSSCCCCBTTEEEEECTTTSCCCCSS T ss_pred CCCCCCEEEECCCEEEEECCCCCCCCCCEEEEEECCCEEECCCC T ss_conf 76655227637958999746789999872799816834674654 No 10 >>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, enzyme mechanism, virginiamycin B hydrolase, streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* (A:182-265) Probab=14.88 E-value=49 Score=10.92 Aligned_cols=60 Identities=5% Similarity=-0.154 Sum_probs=31.9 Q ss_pred CCCEEEEEEECCEEEEEECCCCEEEEECCCEEEEEECCCCCCCEEEEEEEECCEEEEECCCCCEEEEE Q ss_conf 99659999979969999818827995036403677225665000279998355899982884227898 Q gi|254781208|r 76 DGGYALLVFGDKKLQIVVVRSSTKWSPALFGKTYKTPYTFKDNKSLEYAVFGSTAVFVHKDHPPHHLL 143 (578) Q Consensus 76 ~~e~Yil~f~~~~irV~~~~g~~~~~~~~~~~~~~tpy~~~~l~~l~~~QsaD~~fI~h~~~~p~~L~ 143 (578) +++-|+....+++|++|+.+|........ -.......|.+...+++.+..+.++.++++. T Consensus 12 ~g~i~v~d~~~~~I~~~~~~g~~~~~~~~--------~~~~~P~gia~d~~G~i~v~d~~~~~I~~~~ 71 (84) T 2z2n_A 12 DDALWFVEIIGNKIGRITTSGEITEFKIP--------TPNARPHAITAGAGIDLWFTEWGANKIGRLT 71 (84) T ss_dssp TSSEEEEETTTTEEEEECTTCCEEEEECS--------STTCCEEEEEECSTTCEEEEETTTTEEEEEE T ss_pred CCCEEEEECCCCEEEEEECCCCEEEEEEE--------CCCCCEEEEEECCCCCEEEEEECCCEEEEEC T ss_conf 88589986579999999076623676321--------1577126799999981999981599899994 Done!