Query gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 578
No_of_seqs 170 out of 529
Neff 8.2
Searched_HMMs 23785
Date Wed Jun 1 02:04:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781208.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eqo_A TNF receptor-associated 25.0 6.2 0.00026 16.1 -1.5 19 42-60 27-45 (140)
2 3kya_A Putative phosphatase; s 18.0 29 0.0012 11.4 4.4 17 443-459 390-406 (496)
3 2klq_A CBD, P105MCM, DNA repli 16.5 27 0.0011 11.7 0.2 13 127-139 100-112 (114)
4 2oyz_A UPF0345 protein VPA0057 16.1 32 0.0014 11.1 3.6 21 72-92 35-55 (94)
5 1bba_A Bovine pancreatic polyp 14.1 17 0.00071 13.1 -1.3 20 25-44 15-34 (36)
6 2oqc_A Penicillin V acylase; N 12.9 39 0.0017 10.5 5.0 25 492-518 270-294 (327)
7 1zmi_A Neutrophil defensin 2; 12.3 41 0.0017 10.4 1.6 10 336-345 17-26 (29)
8 1f8p_A Neuropeptide Y (PNPY); 11.9 27 0.0012 11.6 -0.8 19 25-43 15-33 (37)
9 3hbc_A Choloylglycine hydrolas 10.9 45 0.0019 10.1 5.6 36 70-105 143-180 (320)
10 2bjf_A Choloylglycine hydrolas 10.7 46 0.0019 10.1 4.4 33 70-102 142-176 (329)
No 1
>2eqo_A TNF receptor-associated factor 3-interacting protein 1; STN_TRAF3IP1_ND domain, interleukin 13 receptor alpha 1-binding protein-1 [HOMO sapiens]; NMR {Homo sapiens}
Probab=24.98 E-value=6.2 Score=16.09 Aligned_cols=19 Identities=26% Similarity=0.287 Sum_probs=14.4
Q ss_pred EEEECCCEECCCCCEEEEC
Q ss_conf 8341071427720210000
Q gi|254781208|r 42 PLRYGPLVSMPLMQEYRDC 60 (578)
Q Consensus 42 ~~p~GGl~rRPGt~fv~~l 60 (578)
|-.+.-|-+|||+||+..+
T Consensus 27 P~LteKLL~kPPFRFLhDI 45 (140)
T 2eqo_A 27 PPLTEKLLSKPPFRYLHDI 45 (140)
T ss_dssp SCCCTTTTTSCCHHHHHHH
T ss_pred CCCCHHHHCCCCHHHHHHH
T ss_conf 9788888169982899999
No 2
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=18.03 E-value=29 Score=11.44 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=9.9
Q ss_pred CCEEEEEECCCCEEEEE
Q ss_conf 67499994699589999
Q gi|254781208|r 443 GDCLVFVCGVGRRIKYI 459 (578)
Q Consensus 443 g~~~~fvq~~g~~vr~~ 459 (578)
.+.++++.....+||-+
T Consensus 390 ~gnlYvaD~~Nh~IRki 406 (496)
T 3kya_A 390 EYDFYFVDRLNFCVRKV 406 (496)
T ss_dssp CEEEEEEEGGGTEEEEE
T ss_pred CCEEEEEECCCCEEEEE
T ss_conf 98299996899989999
No 3
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=16.54 E-value=27 Score=11.70 Aligned_cols=13 Identities=8% Similarity=-0.026 Sum_probs=9.3
Q ss_pred CCEEEEECCCCCE
Q ss_conf 5589998288422
Q gi|254781208|r 127 GSTAVFVHKDHPP 139 (578)
Q Consensus 127 aD~~fI~h~~~~p 139 (578)
.|.++++||||++
T Consensus 100 ~~~~lvvHPNy~v 112 (114)
T 2klq_A 100 EDPYLVVNPNYLL 112 (114)
T ss_dssp CCCBCEECSCCCC
T ss_pred CCEEEEECCCCCC
T ss_conf 7538998899677
No 4
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomics, PSI-2, protein structure initiative; 1.71A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.82.1.22
Probab=16.15 E-value=32 Score=11.13 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=10.9
Q ss_pred EEECCCCEEEEEEECCEEEEE
Q ss_conf 995699659999979969999
Q gi|254781208|r 72 FSIPDGGYALLVFGDKKLQIV 92 (578)
Q Consensus 72 F~fs~~e~Yil~f~~~~irV~ 92 (578)
+.|++++.=+.++-.+.++|-
T Consensus 35 Y~F~T~~~E~MeivsG~l~V~ 55 (94)
T 2oyz_A 35 YTFGTQAPERMTVVKGALVVK 55 (94)
T ss_dssp EEEEESSCEEEEEEESEEEEE
T ss_pred EEECCCCCEEEEEEEEEEEEE
T ss_conf 886599978999996289999
No 5
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=14.09 E-value=17 Score=13.10 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHEEEEEEEEE
Q ss_conf 35899876884153149834
Q gi|254781208|r 25 KDLSLHAQGVAKSRNLIPLR 44 (578)
Q Consensus 25 ~D~~ky~~g~~~~~N~i~~p 44 (578)
-|+.||.+.++...|++..+
T Consensus 15 E~la~Y~~~Lr~YINliTRq 34 (36)
T 1bba_A 15 EQMAQYAAELRRYINMLTRP 34 (36)
T ss_dssp THHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999884126
No 6
>2oqc_A Penicillin V acylase; NTN-hydrolase, conjugated bIle acid hydrolase, choloylglycine hydrolase; 2.50A {Bacillus subtilis}
Probab=12.90 E-value=39 Score=10.55 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=11.2
Q ss_pred CCCEEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 887189999706777756999999836
Q gi|254781208|r 492 EPHSIVWVVLEPKDNSFPRLLGCRFSA 518 (578)
Q Consensus 492 ~p~~~~~~v~~~~~~~dg~l~~~ty~~ 518 (578)
..+...|....+-. .+.++--+|..
T Consensus 270 ~~~~T~~s~v~dl~--~~~~y~~~y~~ 294 (327)
T 2oqc_A 270 EIHYTQYTSVMCNE--TGNYYFHHYDN 294 (327)
T ss_dssp CBCEEEEEEEEETT--TTEEEEEETTE
T ss_pred CCCCEEEEEEEECC--CCEEEEEECCC
T ss_conf 84635999999799--99799998899
No 7
>1zmi_A Neutrophil defensin 2; alpha-defensin, antimicrobial, D-amino acid substitution, antimicrobial protein; 1.15A {Homo sapiens} PDB: 1zmh_A 1zmk_A* 2kht_A 3gny_A 3go0_A* 1dfn_A 2pm4_A 3lvx_A 3hjd_A 3lo4_A 3h6c_A 3lo1_A 3lo2_A 3loe_A 3lo6_A 3lo9_A 2pm5_A 2pm1_A
Probab=12.31 E-value=41 Score=10.43 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=7.1
Q ss_pred EEEECCEEEE
Q ss_conf 7999582899
Q gi|254781208|r 336 VTFHNNRLLF 345 (578)
Q Consensus 336 v~F~~nRL~f 345 (578)
-.||++|+|-
T Consensus 17 tcfy~grvwa 26 (29)
T 1zmi_A 17 TCIYQGRLWA 26 (29)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
T ss_conf 7897155777
No 8
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=11.87 E-value=27 Score=11.62 Aligned_cols=19 Identities=26% Similarity=0.217 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHEEEEEEEE
Q ss_conf 3589987688415314983
Q gi|254781208|r 25 KDLSLHAQGVAKSRNLIPL 43 (578)
Q Consensus 25 ~D~~ky~~g~~~~~N~i~~ 43 (578)
-|+.||...++...|++..
T Consensus 15 Eela~Y~~~LrhYiNliTR 33 (37)
T 1f8p_A 15 EDLARYYSALRHYINLITR 33 (37)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999620
No 9
>3hbc_A Choloylglycine hydrolase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.27A {Bacteroides thetaiotaomicron}
Probab=10.93 E-value=45 Score=10.13 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred EEEEECCC--CEEEEEEECCEEEEEECCCCEEEEECCC
Q ss_conf 99995699--6599999799699998188279950364
Q gi|254781208|r 70 FSFSIPDG--GYALLVFGDKKLQIVVVRSSTKWSPALF 105 (578)
Q Consensus 70 ipF~fs~~--e~Yil~f~~~~irV~~~~g~~~~~~~~~ 105 (578)
+||.+.+. ++.|+|+.++.++||+.+...+..+.+.
T Consensus 143 ~H~~i~D~sG~s~VIE~~~g~l~V~~~~~~~V~TN~P~ 180 (320)
T 3hbc_A 143 LHMAITDETGNTAVIEYLDGKLSIHEGKEYQVMTNSPR 180 (320)
T ss_dssp EEEEEECTTCCEEEEEEETTEEEEEESTTCCEECSSSC
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEECCCCC
T ss_conf 68999948999799996168559997896659879997
No 10
>2bjf_A Choloylglycine hydrolase; amidohydrolase, NTN-hydrolase, bIle acids, BSH; HET: DXC; 1.67A {Clostridium perfringens} PDB: 2bjg_A 2rlc_A* 2rf8_A 2rg2_A
Probab=10.73 E-value=46 Score=10.08 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred EEEEECCC--CEEEEEEECCEEEEEECCCCEEEEE
Q ss_conf 99995699--6599999799699998188279950
Q gi|254781208|r 70 FSFSIPDG--GYALLVFGDKKLQIVVVRSSTKWSP 102 (578)
Q Consensus 70 ipF~fs~~--e~Yil~f~~~~irV~~~~g~~~~~~ 102 (578)
+||.+.+. .+.|+|+.++.+.||+..-++++.+
T Consensus 142 ~H~~i~D~sG~s~ViE~~~g~l~i~~n~~~VmTN~ 176 (329)
T 2bjf_A 142 LHWMISDITGKSIVVEQTKEKLNVFDNNIGVLTNS 176 (329)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEEEECSSCEECSS
T ss_pred EEEEEECCCCCEEEEEEECCCEEEEECCCEEECCC
T ss_conf 47998869999899999689428985896078289
Done!