Query         gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 578
No_of_seqs    170 out of 529
Neff          8.2 
Searched_HMMs 13730
Date          Wed Jun  1 11:55:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781208.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2oyza1 b.82.1.22 (A:2-94) Unc  11.4      25  0.0018   10.2   3.6   21   72-92     34-54  (93)
  2 d1wb9a4 d.75.2.1 (A:2-116) DNA  10.8      26  0.0019   10.1   0.7   18  350-367    22-39  (115)
  3 d1gcca_ d.10.1.2 (A:) GCC-box   10.8      26  0.0019   10.1   2.1   18   46-63      4-21  (63)
  4 d1ewqa4 d.75.2.1 (A:1-120) DNA  10.2      28   0.002    9.9   0.7   17  351-367    27-43  (120)
  5 d1de4c1 a.48.2.1 (C:609-756) T   9.7      18  0.0013   11.3  -1.2   32   27-59     63-94  (148)
  6 d1dfna_ g.9.1.1 (A:) Defensin    9.5      31  0.0022    9.6   1.6   10  336-345    18-27  (30)
  7 d1yuaa2 g.41.3.3 (A:66-122) Pr   8.8      34  0.0025    9.3   2.7   28   60-87     11-38  (57)
  8 d2pvaa_ d.153.1.3 (A:) Penicil   8.5      36  0.0026    9.2   6.0   26  491-518   281-306 (342)
  9 d1p2za1 b.121.2.2 (A:5-650) Ad   8.3      27  0.0019   10.1  -0.7   65   16-89     19-88  (646)
 10 d2hu7a1 b.69.7.2 (A:9-321) Acy   8.1      38  0.0027    9.0   5.1   39   49-90     89-137 (313)

No 1  
>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=11.39  E-value=25  Score=10.23  Aligned_cols=21  Identities=5%  Similarity=0.045  Sum_probs=9.8

Q ss_pred             EEECCCCEEEEEEECCEEEEE
Q ss_conf             995699659999979969999
Q gi|254781208|r   72 FSIPDGGYALLVFGDKKLQIV   92 (578)
Q Consensus        72 F~fs~~e~Yil~f~~~~irV~   92 (578)
                      +.|++++.=+.++-.+.++|-
T Consensus        34 Y~F~T~~~E~MeivsG~l~V~   54 (93)
T d2oyza1          34 YTFGTQAPERMTVVKGALVVK   54 (93)
T ss_dssp             EEEEESSCEEEEEEESEEEEE
T ss_pred             EEECCCCCEEEEEEEEEEEEE
T ss_conf             887599978999996289999


No 2  
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]}
Probab=10.80  E-value=26  Score=10.10  Aligned_cols=18  Identities=17%  Similarity=0.333  Sum_probs=11.2

Q ss_pred             CCCCEEEEECCCCHHHCC
Q ss_conf             786379983147622000
Q gi|254781208|r  350 GDELSVYLSSFGAFYDFS  367 (578)
Q Consensus       350 ~~P~~I~~S~~gd~~nF~  367 (578)
                      ..|++|.+=|.|+|+.++
T Consensus        22 ~~pd~ill~rvG~FYE~y   39 (115)
T d1wb9a4          22 QHPEILLFYRMGDFYTLF   39 (115)
T ss_dssp             HSTTSEEEEEETTEEEEE
T ss_pred             HCCCEEEEEEECCCHHHH
T ss_conf             789869999968651224


No 3  
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.79  E-value=26  Score=10.10  Aligned_cols=18  Identities=11%  Similarity=-0.080  Sum_probs=11.8

Q ss_pred             CCCEECCCCCEEEECCCC
Q ss_conf             071427720210000578
Q gi|254781208|r   46 GPLVSMPLMQEYRDCRLD   63 (578)
Q Consensus        46 GGl~rRPGt~fv~~l~~s   63 (578)
                      =|+.+||.-+|.+++..+
T Consensus         4 rGVr~r~~gkw~A~Ir~~   21 (63)
T d1gcca_           4 RGVRQRPWGKFAAEIRDP   21 (63)
T ss_dssp             TTEEEETTTEEEEEEEET
T ss_pred             CEEEECCCCCEEEEEECC
T ss_conf             207688999889998047


No 4  
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]}
Probab=10.15  E-value=28  Score=9.91  Aligned_cols=17  Identities=24%  Similarity=0.282  Sum_probs=11.4

Q ss_pred             CCCEEEEECCCCHHHCC
Q ss_conf             86379983147622000
Q gi|254781208|r  351 DELSVYLSSFGAFYDFS  367 (578)
Q Consensus       351 ~P~~I~~S~~gd~~nF~  367 (578)
                      .|++|.+-|.|+|+.++
T Consensus        27 ~~d~Ivl~qvG~FYE~Y   43 (120)
T d1ewqa4          27 YPDYLLLFQVGDFYECF   43 (120)
T ss_dssp             CTTSEEEEEETTEEEEE
T ss_pred             CCCEEEEEEECCEEEEC
T ss_conf             89969999828898975


No 5  
>d1de4c1 a.48.2.1 (C:609-756) Transferrin receptor ectodomain, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.66  E-value=18  Score=11.29  Aligned_cols=32  Identities=6%  Similarity=-0.122  Sum_probs=24.0

Q ss_pred             HHHHHHHHHEEEEEEEEEECCCEECCCCCEEEE
Q ss_conf             899876884153149834107142772021000
Q gi|254781208|r   27 LSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRD   59 (578)
Q Consensus        27 ~~ky~~g~~~~~N~i~~p~GGl~rRPGt~fv~~   59 (578)
                      +..+..++...|-.+.+|. |+-+||..|||--
T Consensus        63 ~R~~N~~l~~~Er~fl~~~-glp~r~~~rHvi~   94 (148)
T d1de4c1          63 MKKLNDRVMRVEYHFLSPY-VSPKESPFRHVFW   94 (148)
T ss_dssp             HHHHHHHHHHHHHTTBCTT-SCTTTCCCCBTTT
T ss_pred             HHHHHHHHHHHHHHHCCCC-CCCCCCCCCEEEE
T ss_conf             9999999999999762866-7999974311243


No 6  
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.50  E-value=31  Score=9.64  Aligned_cols=10  Identities=20%  Similarity=0.172  Sum_probs=6.9

Q ss_pred             EEEECCEEEE
Q ss_conf             7999582899
Q gi|254781208|r  336 VTFHNNRLLF  345 (578)
Q Consensus       336 v~F~~nRL~f  345 (578)
                      ..||++|||-
T Consensus        18 tc~y~gr~wa   27 (30)
T d1dfna_          18 TCIYQGRLWA   27 (30)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEEECEEEE
T ss_conf             6898243755


No 7  
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=8.78  E-value=34  Score=9.32  Aligned_cols=28  Identities=11%  Similarity=-0.076  Sum_probs=19.1

Q ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEECC
Q ss_conf             0578885379999956996599999799
Q gi|254781208|r   60 CRLDPRSNRVFSFSIPDGGYALLVFGDK   87 (578)
Q Consensus        60 l~~s~~~~rlipF~fs~~e~Yil~f~~~   87 (578)
                      .+++.++--+|.|.+.+.|+|+..=.++
T Consensus        11 ~~D~dGn~~vvRfsRK~k~qYv~sE~dG   38 (57)
T d1yuaa2          11 QQDPEGNKTMVRFSRKTKQQYVSSEKDG   38 (57)
T ss_dssp             SSCTTCCCEEEEEETTTTEEEEEECCTT
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEEECCC
T ss_conf             6599999769997337870888862278


No 8  
>d2pvaa_ d.153.1.3 (A:) Penicillin V acylase {Bacillus sphaericus [TaxId: 1421]}
Probab=8.48  E-value=36  Score=9.19  Aligned_cols=26  Identities=0%  Similarity=-0.115  Sum_probs=12.1

Q ss_pred             CCCCEEEEEEEECCCCCCEEEEEEEECC
Q ss_conf             7887189999706777756999999836
Q gi|254781208|r  491 EEPHSIVWVVLEPKDNSFPRLLGCRFSA  518 (578)
Q Consensus       491 ~~p~~~~~~v~~~~~~~dg~l~~~ty~~  518 (578)
                      ...+...|.+..+-+  .+.++.-+|..
T Consensus       281 ~~~~~T~wssv~dl~--~~~yy~~~y~~  306 (342)
T d2pvaa_         281 GKTDYTIYTSAMCAQ--SKNYYFKLYDN  306 (342)
T ss_dssp             SCBCEEEEEEEEETT--TCEEEEEETTE
T ss_pred             CCCCCEEEEEEEECC--CCEEEEEECCC
T ss_conf             996856999999899--99799998689


No 9  
>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type 2 [TaxId: 10515]}
Probab=8.30  E-value=27  Score=10.06  Aligned_cols=65  Identities=22%  Similarity=0.134  Sum_probs=0.0

Q ss_pred             ECHHHHHCCCCHHHHHHHHHEEEEEEEEEECCCEECCCCCEEEECCCCCCCEEEEEEEECCCC-----EEEEEEECCEE
Q ss_conf             088784143358998768841531498341071427720210000578885379999956996-----59999979969
Q gi|254781208|r   16 LSPRLLQSRKDLSLHAQGVAKSRNLIPLRYGPLVSMPLMQEYRDCRLDPRSNRVFSFSIPDGG-----YALLVFGDKKL   89 (578)
Q Consensus        16 lsP~L~~gR~D~~ky~~g~~~~~N~i~~p~GGl~rRPGt~fv~~l~~s~~~~rlipF~fs~~e-----~Yil~f~~~~i   89 (578)
                      |||.|++=-.-.+.|.+=-.+-||=++-|+-+++         +=+.---+.|.+|....+++     +|-|..||+++
T Consensus        19 LS~~lvqf~~at~syF~l~nKFR~p~vAPT~~VT---------TerSQRLqlRfvPv~~eDt~~sYk~RftL~VGDnrV   88 (646)
T d1p2za1          19 LSPGLVQFARATETYFSLNNKFRNPTVAPTHDVT---------TDRSQRLTLRFIPVDREDTAYSYKARFTLAVGDNRV   88 (646)
T ss_dssp             SCHHHHHHHHHHTTTSCCGGGSCCCCCCCCSSSB---------CCSCCCSEEEECCSEEEECSSEEEEEEEEEECTTCC
T ss_pred             CCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCC---------CCHHHCCEEEEECCCCCCCCCEEEEEEEEEECCCCE
T ss_conf             3845677877415501456515698238888977---------304343157674674267873278999986276503


No 10 
>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}
Probab=8.12  E-value=38  Score=9.01  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=0.0

Q ss_pred             EECCCCCEEEECCCCCCCEEEEEEEE----------CCCCEEEEEEECCEEE
Q ss_conf             42772021000057888537999995----------6996599999799699
Q gi|254781208|r   49 VSMPLMQEYRDCRLDPRSNRVFSFSI----------PDGGYALLVFGDKKLQ   90 (578)
Q Consensus        49 ~rRPGt~fv~~l~~s~~~~rlipF~f----------s~~e~Yil~f~~~~ir   90 (578)
                      .||||-+|--+.   +++.|+..-..          +.++.++-++.++++|
T Consensus        89 lk~~GEE~~i~s---pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklr  137 (313)
T d2hu7a1          89 TSRPGEEQRLEA---VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR  137 (313)
T ss_dssp             TTSTTCEEECTT---SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred             CCCCCEEEEECC---CCEEEEEEEEECCCEEEEECCCCCCEEEEEEECCCEE
T ss_conf             588880247337---7407998865268338996556783379998289554


Done!