RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781208|ref|YP_003065621.1| hypothetical protein
CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62]
         (578 letters)



>gnl|CDD|147387 pfam05176, ATP-synt_10, ATP10 protein.  ATP 10 is essential for the
           assembly of a functional mitochondrial ATPase complex.
          Length = 255

 Score = 29.6 bits (67), Expect = 2.3
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 299 GRSISVAPQS-QTLFQAGVSVVSWFMSAWGEQ 329
           GR+++  PQ+   L +  VSVV  F SAWGE+
Sbjct: 108 GRTLAGPPQNTTDLLRGKVSVVRLFSSAWGEK 139


>gnl|CDD|38448 KOG3238, KOG3238, KOG3238, Chloride ion current inducer protein
           [Inorganic ion transport and metabolism].
          Length = 216

 Score = 28.9 bits (64), Expect = 3.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 400 GEGVLVGCDTSLWLLSISLSKGLSIDFRRVSGSGVYACPPVSVGDCL 446
           G G L   +++L  LS S +KG S+++  +S   +   P   + + L
Sbjct: 34  GTGTLYIAESTLSWLSTSGAKGFSVEYPTISLHAISRDPSDCLSEHL 80


>gnl|CDD|73154 cd01647, RT_LTR, RT_LTR: Reverse transcriptases (RTs) from
           retrotransposons and retroviruses which have long
           terminal repeats (LTRs) in their DNA copies but not in
           their RNA template. RT catalyzes DNA replication from an
           RNA template, and is responsible for the replication of
           retroelements. An RT gene is usually indicative of a
           mobile element such as a retrotransposon or retrovirus.
           RTs are present in a variety of mobile elements,
           including retrotransposons, retroviruses, group II
           introns, bacterial msDNAs, hepadnaviruses, and
           Caulimoviruses..
          Length = 177

 Score = 27.9 bits (62), Expect = 9.0
 Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 50  SMPLMQEYRDCRLDPRSNRVFSFSIPDGGYALLV--FGDK 87
            + L   Y    L   S    +F  P G Y      FG K
Sbjct: 62  KLDLRSGYHQIPLAEESRPKTAFRTPFGLYEYTRMPFGLK 101


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0730    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,120,418
Number of extensions: 374177
Number of successful extensions: 673
Number of sequences better than 10.0: 1
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 5
Length of query: 578
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 479
Effective length of database: 4,124,446
Effective search space: 1975609634
Effective search space used: 1975609634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)