RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781208|ref|YP_003065621.1| hypothetical protein
CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62]
(578 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 60.3 bits (146), Expect = 1e-09
Identities = 89/495 (17%), Positives = 140/495 (28%), Gaps = 218/495 (44%)
Query: 95 RSSTKWSP-ALFGKTYKTPYTFKDNKSLEYAVFGSTAVFVHKDHPPHHLLYIQDGDKISF 153
R K S ALF + + A+FG Q G+
Sbjct: 135 RPFDKKSNSALFRAV-------GEGNAQLVAIFGG-----------------Q-GN-TDD 168
Query: 154 TFDEIKFLP---PPWLGDGMISGVKSNAKL-SISQADTSTARITSDMKIF-KPLDKGRSI 208
F+E++ L +GD +I S L + + T A K+F + L+ I
Sbjct: 169 YFEELRDLYQTYHVLVGD-LIK--FSAETLSELIR-TTLDAE-----KVFTQGLN----I 215
Query: 209 R--LGCHPPEWAKNTNYSIGAYIVADDKVYRSLTTGRSGDRFGYSKGATYVKDNNITWIT 266
L P + +Y + I S G + A YV +T
Sbjct: 216 LEWL--ENPSNTPDKDYLLSIPI--------------SCPLIGVIQLAHYV-------VT 252
Query: 267 --VLNLSSKTSRESASGAVAPYYVWGDIKDVSKDGRS--ISVAPQSQTLFQAGVSVV-SW 321
+L + R GA G S + A ++ SW
Sbjct: 253 AKLLGFTPGELRSYLKGAT---------------GHSQGLVTA--------VAIAETDSW 289
Query: 322 FMSAWGEQEGYPSHVTFHNN-----RLLFS-GSKGDELSVYLSSFGAFYDFSLDGEYGCY 375
E +F + +LF G + E Y
Sbjct: 290 ------E--------SFFVSVRKAITVLFFIGVRCYE---------------------AY 314
Query: 376 DPTKALTTAVTDFSASTIHWMHPFGEGVLVGCDTSLWLLSISLSKGLSIDF--------- 426
P +L ++ + S EG +LSI L+ +
Sbjct: 315 -PNTSLPPSILEDSLEN-------NEG------VPSPMLSI---SNLTQEQVQDYVNKTN 357
Query: 427 ------RRVSGS---G----VYACPPVS-VGDCLVFVCGVGRRIKYISGSTEQGFRFNEI 472
++V S G V + PP S G L R+ K SG +Q + I
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL-----RKAKAPSG-LDQ----SRI 407
Query: 473 TQLADHLFNQRILQLVYQEEP-----HSIVWVVLEPKDNSFPRLL------GCRFSAEGE 521
F++R L+ + P HS +L P + + F+A+
Sbjct: 408 P------FSERKLKFSNRFLPVASPFHSH---LLVP---ASDLINKDLVKNNVSFNAK-- 453
Query: 522 GDFA---WHTHMISD 533
D + T SD
Sbjct: 454 -DIQIPVYDTFDGSD 467
Score = 39.5 bits (92), Expect = 0.002
Identities = 44/286 (15%), Positives = 82/286 (28%), Gaps = 112/286 (39%)
Query: 16 LSPRLLQSRKDLSLHAQGVAKS----RNLIPLRYGPLVSMPLMQEYRD---CRLDPRSNR 68
L P +L+ + + +GV NL + +Q+Y + L P +
Sbjct: 319 LPPSILEDSLE---NNEGVPSPMLSISNL---------TQEQVQDYVNKTNSHL-PAGKQ 365
Query: 69 VFSFSIPDGGYALLVFGDKK------LQIVVVRSSTKWSPALFGKTYKTPYTFKDNKSLE 122
V S+ +G L+V G + L + ++ + + + P F + K
Sbjct: 366 V-EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS------RIP--FSERK--- 413
Query: 123 YAVFGSTAVFVHKDHP---PHHLLYIQD-GDKIS--FTFDEIKFLPPPWLGDGMISGVKS 176
F ++ P P H + D I+ + + F
Sbjct: 414 -------LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA-------------- 452
Query: 177 NAKLSISQADTSTARITSDMK-----IFKPLDKGRSIRLGCHPP-EWAKNTNYS------ 224
+ I DT SD++ I + + + P +W T +
Sbjct: 453 -KDIQIPVYDTFDG---SDLRVLSGSISERI-----VDCIIRLPVKWETTTQFKATHILD 503
Query: 225 --------IGAY------------IVADDKVYRSLTTGRSGDRFGY 250
+G IVA L D +G+
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGT-----LDINPD-DDYGF 543
Score = 34.5 bits (79), Expect = 0.069
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 36/123 (29%)
Query: 461 GSTEQGFRFNEITQLADHLFNQRILQLVYQEEPHSIVWVVLEPKDNSFPRLLGCRFSAE- 519
G+T+ F E L D L+ Y +V +++ + L+ AE
Sbjct: 164 GNTDD--YFEE---LRD-LYQ------TYH----VLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 520 --GEG-DF-AWHTHMIS--DKHYVLSAA-SFPNDNR--GGTSL--WMLVA----LSAGEE 564
+G + W + + DK Y+LS S P G L +++ A + GE
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCP----LIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 565 RSF 567
RS+
Sbjct: 264 RSY 266
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.69
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 15/30 (50%)
Query: 80 ALLVFGDKKLQIVVVRSSTKW-----SPAL 104
AL KKLQ +S K +PAL
Sbjct: 21 AL-----KKLQ-----ASLKLYADDSAPAL 40
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 30.6 bits (68), Expect = 0.99
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 131 VFVHKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGM-ISGVKSNAKLSISQADTST 189
V V D P + + + + + P L + G+ AK+S S +
Sbjct: 166 VPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIA 225
Query: 190 ARITSDMKIFK 200
++D K
Sbjct: 226 LGDSADEVARK 236
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 30.3 bits (67), Expect = 1.2
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 26/91 (28%)
Query: 49 VSMPLMQEYRDCRLDPRSNRV-FSFSI-PDGGYALLVFGDKKLQIVVVRSST-------- 98
+S Q + +V F + PDG + + ++ +
Sbjct: 146 LSRNQPQYPARAQALRIEGQVKVKFDVTPDG---------RVDNVQILSAKPANMFEREV 196
Query: 99 -------KWSPALFGKTYKTPYTFKDNKSLE 122
++ P G FK N + E
Sbjct: 197 KNAMRRWRYEPGKPGSGIVVNILFKINGTTE 227
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.2 bits (62), Expect = 5.6
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 389 SASTIHW-MHPFGEGVLVGCDTSLWLLS-ISLSKG 421
SA T W M FGE L GC W++ IS G
Sbjct: 833 SART-RWEMEAFGEFSLEGCVEMAWIMGFISYHNG 866
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase;
2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3
PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Length = 549
Score = 27.6 bits (61), Expect = 8.7
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 16/104 (15%)
Query: 457 KYISGSTEQGFRFNEITQLADHLFNQRILQLVYQEEPHSIVWVVLEPKDNSFP------- 509
+I + I +LA FN I+Q +Q+E + FP
Sbjct: 211 WFIDAYARRPDMNPLIFELAKLNFN--IIQATHQQELKDLSRWW---SRLCFPEKLPFVR 265
Query: 510 -RLLGCRFSAEG---EGDFAWHTHMISDKHYVLSAASFPNDNRG 549
RL+ F A G + M + + + D G
Sbjct: 266 DRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYG 309
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,013,476
Number of extensions: 228479
Number of successful extensions: 586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 16
Length of query: 578
Length of database: 5,693,230
Length adjustment: 98
Effective length of query: 480
Effective length of database: 3,317,318
Effective search space: 1592312640
Effective search space used: 1592312640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.9 bits)