RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781208|ref|YP_003065621.1| hypothetical protein
CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62]
         (578 letters)



>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain
           {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 281

 Score = 27.4 bits (59), Expect = 3.6
 Identities = 16/138 (11%), Positives = 35/138 (25%), Gaps = 1/138 (0%)

Query: 296 SKDGRSISVAPQSQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGD-ELS 354
                 I  A   + + +    +  W     G +      V     + +   S       
Sbjct: 139 LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPV 198

Query: 355 VYLSSFGAFYDFSLDGEYGCYDPTKALTTAVTDFSASTIHWMHPFGEGVLVGCDTSLWLL 414
           +         D    G+    D         T F+      ++  G  +L     S+++ 
Sbjct: 199 IVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIF 258

Query: 415 SISLSKGLSIDFRRVSGS 432
           +    K   I+   +   
Sbjct: 259 NPDTEKIEKIEIGDLESP 276


>d1uhua_ a.61.1.6 (A:) Product of RIKEN cDNA 3110009e22
           {Unclassified, murine endogenous retrovirus [TaxId:
           12908]}
          Length = 105

 Score = 26.3 bits (58), Expect = 6.2
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 11/40 (27%)

Query: 134 HKDHPPHHLLYIQDGDKISFTFDEIKFLPPPWLGDGMISG 173
           H D  P    YI         + ++    PPW+  G  SG
Sbjct: 77  HPDQQP----YIT-------VWQDLVQNSPPWIKSGPSSG 105


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,171,947
Number of extensions: 100908
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 7
Length of query: 578
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 488
Effective length of database: 1,171,896
Effective search space: 571885248
Effective search space used: 571885248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)