Query gi|254781209|ref|YP_003065622.1| hypothetical protein CLIBASIA_05580 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 175 No_of_seqs 109 out of 402 Neff 7.9 Searched_HMMs 39220 Date Mon May 30 08:15:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781209.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PHA00662 hypothetical protein 100.0 0 0 295.4 16.3 170 2-174 3-195 (215) 2 PHA00428 tail tubular protein 100.0 3.8E-31 9.8E-36 202.2 15.8 162 1-167 9-177 (193) 3 PRK05446 imidazole glycerol-ph 22.0 57 0.0014 13.6 2.7 56 116-171 295-352 (354) 4 smart00040 CSF2 Granulocyte-ma 18.6 52 0.0013 13.8 1.0 41 3-44 15-55 (121) 5 pfam06426 SATase_N Serine acet 17.1 73 0.0019 12.9 4.6 45 119-163 31-77 (105) 6 pfam02945 Endonuclease_7 Recom 16.7 49 0.0013 13.9 0.5 15 41-55 16-30 (81) 7 KOG3028 consensus 16.6 45 0.0011 14.2 0.3 72 5-81 145-217 (313) 8 cd01256 PH_dynamin Dynamin ple 16.5 56 0.0014 13.6 0.7 59 66-124 39-104 (110) 9 KOG0428 consensus 15.8 79 0.002 12.7 3.3 46 47-93 40-89 (314) 10 cd02851 Galactose_oxidase_C_te 14.6 85 0.0022 12.5 1.9 32 45-77 42-73 (101) No 1 >PHA00662 hypothetical protein Probab=100.00 E-value=0 Score=295.40 Aligned_cols=170 Identities=25% Similarity=0.365 Sum_probs=149.3 Q ss_pred CHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-CCCCCCEEEECCCCCEE Q ss_conf 889999999997182-1124336889789999999679999886404775111100003456-77676504654855000 Q gi|254781209|r 2 TELEICNWALLKLGQ-RPLENWNERSLKADYCRLLLPPIHKGLLRSFSWSFATQSMDLLPLY-FTYNGELKYYIPLKCLK 79 (175) Q Consensus 2 T~l~i~N~aL~~iG~-~~I~sl~e~t~~A~~~~~~y~~~r~~~L~~~~W~Fa~~r~~L~~~~-~~~~~~~~y~lP~D~lr 79 (175) |+|+|||+||.+||+ .+|+||+|+|++|++|+++|+++|+++|++|+||||++|++|+.++ ++++|.|+|+||+|||| T Consensus 3 S~v~Icn~AL~~lG~~~~I~s~~e~s~~A~~c~~~Y~~~r~~~L~~~~W~fA~~r~~La~~~~~p~~~~~ay~lP~DcLr 82 (215) T PHA00662 3 SEVDICNRALAYIGDERTIASLNEGSKQAEYCARFYDFARDALLELHTWGFATKRAQLAAMGISPPEWRYAYAQPADAIR 82 (215) T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEECCCHHHHEE T ss_conf 48999999999857788614777899899999988899999999739745465433343047899876442338157156 Q ss_pred EEECCCCCC------------------CCCCEEEECCCCCCEEEEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 232045663------------------12312543047877089999971786-67559999999999999995775296 Q gi|254781209|r 80 VLNTSEETQ------------------LRGRCIVARGDTPRPLSLKYIGEVPL-SDCDPLYQEAFALKLAGELCPPLIMD 140 (175) Q Consensus 80 v~~v~~~~~------------------~~~~~~~~~~~~~~~~~~~yv~~~~~-~~~p~~f~~~i~~~lA~~~A~~itg~ 140 (175) |+.|.++.. ..|+++++ +.++++++||+++++ +.||++|+++|+++||+++|++|||| T Consensus 83 v~~v~~~~~~~~~~~~~~~~~~~~e~~~~G~~I~t---d~~~~~l~Yi~rvtD~~~fd~~F~~aLa~~LAa~lA~piT~s 159 (215) T PHA00662 83 IVAVLPHGAANIEAGIDNAQPFSCEIDNTGDIILT---NQVNAVARYISRVTDTNKFDALFVEALAWRLAAMLAGPLTGS 159 (215) T ss_pred EEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEE---CCCCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 66772388655543334565224430566886882---698618999984588033889999999999999988876198 Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCC Q ss_conf 89999999999999--99999832217873344337 Q gi|254781209|r 141 DQMRSYLKGESERV--LAVAMDMDGVEIPEDRGYHN 174 (175) Q Consensus 141 ~~l~~~l~q~~~~~--l~~A~~~Da~q~~~~~~~~~ 174 (175) .++.+.+++++++. +++|+..|++|++++++... T Consensus 160 ~~l~~~~~~~~~~~~~~A~A~~~Da~e~~~~~~~~~ 195 (215) T PHA00662 160 AGAAESARCVGAMQIYLAQAMVSNANQRPTKPAHMD 195 (215) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 799999999999999998876424556888877756 No 2 >PHA00428 tail tubular protein A Probab=99.98 E-value=3.8e-31 Score=202.19 Aligned_cols=162 Identities=19% Similarity=0.275 Sum_probs=140.1 Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCCCCCCCCCEEEECCCCCEE Q ss_conf 9889999999997182112433688978999999967999988640477511110-000345677676504654855000 Q gi|254781209|r 1 MTELEICNWALLKLGQRPLENWNERSLKADYCRLLLPPIHKGLLRSFSWSFATQS-MDLLPLYFTYNGELKYYIPLKCLK 79 (175) Q Consensus 1 ~T~l~i~N~aL~~iG~~~I~sl~e~t~~A~~~~~~y~~~r~~~L~~~~W~Fa~~r-~~L~~~~~~~~~~~~y~lP~D~lr 79 (175) ||+|++||.+|+.|||+||+||+++++++.+|.++++++.+++ ++.||+||+++ ..|.|+... ..+.+|+|+|+ T Consensus 9 ~teL~AVN~iL~~IGeaPV~sLd~~npd~~~A~~~L~ev~r~V-QseGW~FNTE~~~~ltpd~~~----~~I~vP~n~L~ 83 (193) T PHA00428 9 LTELDAVNDILASIGEPPVTTLDDTNPDVANARRILNDINRQV-QSEGWTFNIEEGATLTPDPFT----GRINLPSDYLS 83 (193) T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCEECCCCCEEEEECCCC----CEEECCCCEEE T ss_conf 3348999999997187876435678967999999999998999-860524222325574126999----95935654899 Q ss_pred EEECCCCC--CCCCCEEEEC----CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 23204566--3123125430----47877089999971786675599999999999999957752968999999999999 Q gi|254781209|r 80 VLNTSEET--QLRGRCIVAR----GDTPRPLSLKYIGEVPLSDCDPLYQEAFALKLAGELCPPLIMDDQMRSYLKGESER 153 (175) Q Consensus 80 v~~v~~~~--~~~~~~~~~~----~~~~~~~~~~yv~~~~~~~~p~~f~~~i~~~lA~~~A~~itg~~~l~~~l~q~~~~ 153 (175) +......+ ..+|++++.. ....+++++++|+..+|+++|+.|++||++|+|++++.+++|++++.+.+.+++++ T Consensus 84 vd~~~~~~d~v~Rg~~LYDr~n~T~~f~~~i~~dvv~~l~fedlPe~~q~yIt~rAAr~f~~r~vG~~~l~q~l~~dE~~ 163 (193) T PHA00428 84 FYPDSGDTQYVNRGGYVYDRSTGTDRFGSPVTVRLVLLREFDEMPECFRRYIVTKAARQFNTRFFGAPETAQVLAEEEQE 163 (193) T ss_pred EECCCCCCEEEEECCEEEECCCCCEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 97689952479766899985889667289727879998134548899999999999999999853869999999999999 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 99999983221787 Q gi|254781209|r 154 VLAVAMDMDGVEIP 167 (175) Q Consensus 154 ~l~~A~~~Da~q~~ 167 (175) +.+.+++++++|+. T Consensus 164 Ara~l~e~e~~q~d 177 (193) T PHA00428 164 ARAEVSEYETDQGD 177 (193) T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999984578 No 3 >PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional Probab=22.02 E-value=57 Score=13.57 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=40.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 755999999999999999577529689--99999999999999999832217873344 Q gi|254781209|r 116 DCDPLYQEAFALKLAGELCPPLIMDDQ--MRSYLKGESERVLAVAMDMDGVEIPEDRG 171 (175) Q Consensus 116 ~~p~~f~~~i~~~lA~~~A~~itg~~~--l~~~l~q~~~~~l~~A~~~Da~q~~~~~~ 171 (175) ++-+-|.+.++..+..-+-..+.|.+. +.+.+-.-...+|++|...|+.+-|+..+ T Consensus 295 el~~~Ff~s~a~~~~~tlHi~~~G~n~HH~~Ea~FKa~a~Al~~A~~~~~~~vpSTKG 352 (354) T PRK05446 295 EMVEHFFRSLSDAMGCTLHLKTKGKNDHHKVESLFKAFGRALRQAIRVEGNTLPSSKG 352 (354) T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 7799999999960788899984138708899999999999999985638998989886 No 4 >smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells. Probab=18.63 E-value=52 Score=13.77 Aligned_cols=41 Identities=10% Similarity=-0.033 Sum_probs=25.9 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 899999999971821124336889789999999679999886 Q gi|254781209|r 3 ELEICNWALLKLGQRPLENWNERSLKADYCRLLLPPIHKGLL 44 (175) Q Consensus 3 ~l~i~N~aL~~iG~~~I~sl~e~t~~A~~~~~~y~~~r~~~L 44 (175) -||++.-||+.+...+-+. .+-+....+.+.+++.-.-.+| T Consensus 15 HVdAIkEAlsLLn~s~d~~-a~mnE~VeVVSe~Fd~qeptCl 55 (121) T smart00040 15 HVDAIKEALSLLNDSRDTA-AVMNETVEVVSEMFDLQEPTCL 55 (121) T ss_pred HHHHHHHHHHHHHCCCCHH-HHHCCHHHHHHHHCCCCCCCHH T ss_conf 9999999999985488337-6742148999870487787289 No 5 >pfam06426 SATase_N Serine acetyltransferase, N-terminal. The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants and bacteria. Probab=17.06 E-value=73 Score=12.92 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHC Q ss_conf 99999999999999957752968999999999999--9999998322 Q gi|254781209|r 119 PLYQEAFALKLAGELCPPLIMDDQMRSYLKGESER--VLAVAMDMDG 163 (175) Q Consensus 119 ~~f~~~i~~~lA~~~A~~itg~~~l~~~l~q~~~~--~l~~A~~~Da 163 (175) +.|.+++++++|.+++.+......+.....+-+.. .+.++...|- T Consensus 31 ~sl~~ALs~~La~kL~~~~~~~~~l~~~~~~a~~~~p~i~~~a~~Dl 77 (105) T pfam06426 31 DSLESALAYRLANKLASSTMSADTLRELFDEAYAADPEIVEAARADL 77 (105) T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 87999999999998389857899999999999982969999999999 No 6 >pfam02945 Endonuclease_7 Recombination endonuclease VII. Probab=16.72 E-value=49 Score=13.94 Aligned_cols=15 Identities=7% Similarity=-0.137 Sum_probs=10.5 Q ss_pred HHHHHHCCCCCEEEE Q ss_conf 988640477511110 Q gi|254781209|r 41 KGLLRSFSWSFATQS 55 (175) Q Consensus 41 ~~~L~~~~W~Fa~~r 55 (175) ++++...++.||+=. T Consensus 16 ~~ll~~Q~g~CaiC~ 30 (81) T pfam02945 16 WAIYEAQGGRCAICQ 30 (81) T ss_pred HHHHHHHCCCCCCCC T ss_conf 999999399887889 No 7 >KOG3028 consensus Probab=16.57 E-value=45 Score=14.16 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=43.2 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCEEEECCCCCEEEE Q ss_conf 99999999718211243368897899999996799998864047751111000034567767-650465485500023 Q gi|254781209|r 5 EICNWALLKLGQRPLENWNERSLKADYCRLLLPPIHKGLLRSFSWSFATQSMDLLPLYFTYN-GELKYYIPLKCLKVL 81 (175) Q Consensus 5 ~i~N~aL~~iG~~~I~sl~e~t~~A~~~~~~y~~~r~~~L~~~~W~Fa~~r~~L~~~~~~~~-~~~~y~lP~D~lrv~ 81 (175) +|+|+....+|+.+ ..+...-..++..|+.... .|.+.-|=|+-+-..|......+- .-++..||.|.+++. T Consensus 145 qAk~rl~l~~g~~~----~~e~~i~~~Aska~~~LS~-~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~ 217 (313) T KOG3028 145 QAKERLQLTLGELT----EREDQIYKDASKALNLLST-LLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVH 217 (313) T ss_pred HHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHH-HHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 99999999848860----5678999999999999999-8467617637987368899999999997444871258999 No 8 >cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. Probab=16.45 E-value=56 Score=13.62 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=31.9 Q ss_pred CCCEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEE-----EECC-CH-HHHHHHHHHH Q ss_conf 7650465485500023204566312312543047877089999-----9717-86-6755999999 Q gi|254781209|r 66 NGELKYYIPLKCLKVLNTSEETQLRGRCIVARGDTPRPLSLKY-----IGEV-PL-SDCDPLYQEA 124 (175) Q Consensus 66 ~~~~~y~lP~D~lrv~~v~~~~~~~~~~~~~~~~~~~~~~~~y-----v~~~-~~-~~~p~~f~~~ 124 (175) +-...|.||-|.|+++++..+.............+...+|-+| ..+. ++ +.|-..|.++ T Consensus 39 ekekky~l~ld~lklrd~E~gfms~~~~falF~~~~rNvyKD~kqlEL~~~sqe~vdsWKASfLRA 104 (110) T cd01256 39 EKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110) T ss_pred HHHHCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHHEECCCCHHHHHHHHHHHHHC T ss_conf 654332003477320100102345671488866764124530233100368588898999998863 No 9 >KOG0428 consensus Probab=15.78 E-value=79 Score=12.73 Aligned_cols=46 Identities=9% Similarity=0.085 Sum_probs=26.0 Q ss_pred CCCCCEEEEEECCCCCCCCCCCEEEECCCCCEE----EEECCCCCCCCCCE Q ss_conf 477511110000345677676504654855000----23204566312312 Q gi|254781209|r 47 FSWSFATQSMDLLPLYFTYNGELKYYIPLKCLK----VLNTSEETQLRGRC 93 (175) Q Consensus 47 ~~W~Fa~~r~~L~~~~~~~~~~~~y~lP~D~lr----v~~v~~~~~~~~~~ 93 (175) +.|+|+.+- .+..+-.++-|-..++||+|.-. ++-..+.++++..+ T Consensus 40 FEWhFtiRG-p~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~nk 89 (314) T KOG0428 40 FEWHFTIRG-PPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEVNK 89 (314) T ss_pred EEEEEEEEC-CCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEECC T ss_conf 147888537-99877657414435856877898998079976887334076 No 10 >cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. Probab=14.61 E-value=85 Score=12.55 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=21.7 Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCEEEECCCCC Q ss_conf 404775111100003456776765046548550 Q gi|254781209|r 45 RSFSWSFATQSMDLLPLYFTYNGELKYYIPLKC 77 (175) Q Consensus 45 ~~~~W~Fa~~r~~L~~~~~~~~~~~~y~lP~D~ 77 (175) -.|.+|+..|++.|.- ....+..+...+|.|- T Consensus 42 ~THs~n~~QR~v~L~~-~~~~~~~~~v~~P~~~ 73 (101) T cd02851 42 ATHTVNTDQRRIPLTL-FSVGGNSYSVQIPSDP 73 (101) T ss_pred CCCCCCCCCCEEECCC-EECCCCEEEEEECCCC T ss_conf 4306578876886540-8358998999838998 Done!