Query gi|254781209|ref|YP_003065622.1| hypothetical protein CLIBASIA_05580 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 175
No_of_seqs 109 out of 402
Neff 7.9
Searched_HMMs 33803
Date Wed Jun 1 23:51:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781209.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2qx5_A Nucleoporin NIC96; mRN 23.5 44 0.0013 13.9 1.8 33 2-34 4-43 (82)
2 >2nsf_A Hypothetical protein C 17.6 61 0.0018 13.0 2.7 22 114-135 1-22 (84)
3 >2hzm_A RNA polymerase II medi 14.8 67 0.002 12.8 1.1 73 48-131 1-81 (93)
4 >3a2v_A Probable peroxiredoxin 12.4 64 0.0019 12.9 0.5 13 44-56 22-34 (35)
5 >2uwj_E Type III export protei 9.2 1.1E+02 0.0033 11.5 2.2 39 116-154 14-57 (70)
6 >2cul_A Glucose-inhibited divi 8.5 1.2E+02 0.0035 11.3 2.5 39 36-75 24-62 (63)
7 >2ixs_A SDAI restriction endon 7.1 1.4E+02 0.0041 10.9 0.6 74 10-87 39-132 (159)
8 >3cuz_A MSA, malate synthase A 7.0 1.4E+02 0.0041 10.9 0.9 24 11-34 34-57 (134)
9 >3cux_A Malate synthase; TIM b 6.9 1.4E+02 0.0042 10.9 0.9 24 11-34 34-57 (134)
10 >1io7_A Cytochrome P450 CYP119 6.9 1.4E+02 0.0042 10.9 2.5 52 1-52 106-168 (228)
No 1
>>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A (A:471-552)
Probab=23.46 E-value=44 Score=13.86 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=21.2
Q ss_pred CHHHHHHHHHH-----HCCCCCCCCCCCCC--HHHHHHHH
Q ss_conf 88999999999-----71821124336889--78999999
Q gi|254781209|r 2 TELEICNWALL-----KLGQRPLENWNERS--LKADYCRL 34 (175)
Q Consensus 2 T~l~i~N~aL~-----~iG~~~I~sl~e~t--~~A~~~~~ 34 (175)
|.++|+|++|+ ..|+.|+-..++++ .-...+++
T Consensus 4 ~VIsiiNr~Lse~ls~~~l~~p~~~~~~t~~~dpV~LAk~ 43 (82)
T 2qx5_A 4 IVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARR 43 (82)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9999999999999705666677767422342478999999
No 2
>>2nsf_A Hypothetical protein CGL3021; metal binding, isomerase; 1.75A {Corynebacterium glutamicum} (A:178-261)
Probab=17.61 E-value=61 Score=13.00 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6675599999999999999957
Q gi|254781209|r 114 LSDCDPLYQEAFALKLAGELCP 135 (175)
Q Consensus 114 ~~~~p~~f~~~i~~~lA~~~A~ 135 (175)
|.|||+.|++-+..-++.+++.
T Consensus 1 f~D~P~~f~~rll~~l~~r~~~ 22 (84)
T 2nsf_A 1 FGDIPEVILRTLAAEITQKWTS 22 (84)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6542058999999999864023
No 3
>>2hzm_A RNA polymerase II mediator complex subunit 20; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 2hzs_A (A:36-128)
Probab=14.76 E-value=67 Score=12.78 Aligned_cols=73 Identities=10% Similarity=0.168 Sum_probs=33.9
Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEECCCHHH--------HHH
Q ss_conf 775111100003456776765046548550002320456631231254304787708999997178667--------559
Q gi|254781209|r 48 SWSFATQSMDLLPLYFTYNGELKYYIPLKCLKVLNTSEETQLRGRCIVARGDTPRPLSLKYIGEVPLSD--------CDP 119 (175)
Q Consensus 48 ~W~Fa~~r~~L~~~~~~~~~~~~y~lP~D~lrv~~v~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~~~~--------~p~ 119 (175)
||+|..|--...+ |.+|...-+++......-..+..++.+... ..+....+.+++++. .+.
T Consensus 1 ~WSfefK~fR~n~----------~n~P~~~sk~lytlt~s~~~~~tVlI~n~s-A~Vtt~~~~eip~~~~~ng~ttg~~d 69 (93)
T 2hzm_A 1 PWSIDFRTYRCSI----------KNLPADVSKLMYSITFHHHGRQTVLIKDNS-AMVTTAAAADIPPALVFNGSSTGVPE 69 (93)
T ss_dssp CEEEEEEEEEECS----------CCC----CCEEEEEEEESSSEEEEEEETTE-EEEEECCGGGSCHHHHHTTSSCSCCC
T ss_pred CCEEEEEEHHCCC----------CCCCHHHHHHEEEEECCCCCCEEEEECCCE-EEEECCCCCCCCHHHHHCCCCCCCCC
T ss_conf 6528978100576----------779853420236851256897049984865-79854752348876750665578896
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254781209|r 120 LYQEAFALKLAG 131 (175)
Q Consensus 120 ~f~~~i~~~lA~ 131 (175)
.|-..|+.||..
T Consensus 70 ~fD~~l~~KLss 81 (93)
T 2hzm_A 70 SIDTILSSKLSN 81 (93)
T ss_dssp CHHHHHHHHSTT
T ss_pred CHHHHHHHHHHH
T ss_conf 389999999999
No 4
>>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix K1} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A (A:183-217)
Probab=12.44 E-value=64 Score=12.87 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=10.0
Q ss_pred HHHCCCCCEEEEE
Q ss_conf 6404775111100
Q gi|254781209|r 44 LRSFSWSFATQSM 56 (175)
Q Consensus 44 L~~~~W~Fa~~r~ 56 (175)
.+-+.|+|+.|.+
T Consensus 22 ~eC~DWwfC~Kkv 34 (35)
T 3a2v_A 22 YRSLDWWFCWDTP 34 (35)
T ss_dssp SEEEETTEEEECC
T ss_pred EEEEEEEEEECCC
T ss_conf 2020012441356
No 5
>>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} (E:)
Probab=9.17 E-value=1.1e+02 Score=11.49 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHH
Q ss_conf 755999999999999999577-----529689999999999999
Q gi|254781209|r 116 DCDPLYQEAFALKLAGELCPP-----LIMDDQMRSYLKGESERV 154 (175)
Q Consensus 116 ~~p~~f~~~i~~~lA~~~A~~-----itg~~~l~~~l~q~~~~~ 154 (175)
.-+|.|.+.|..+|-..++.- --|+.+..+.++|++...
T Consensus 14 gadp~~arel~~qL~qAL~~~Kr~l~rGg~~qqyq~wQqeAdAI 57 (70)
T 2uwj_E 14 VADGTHAAALRQRLQAALAECRRELARGACPERFQFLQQQARAL 57 (70)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 58838899999999999999999998189899999999999999
No 6
>>2cul_A Glucose-inhibited division protein A-related protein, probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus HB8} (A:123-185)
Probab=8.55 E-value=1.2e+02 Score=11.34 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEECCC
Q ss_conf 6799998864047751111000034567767650465485
Q gi|254781209|r 36 LPPIHKGLLRSFSWSFATQSMDLLPLYFTYNGELKYYIPL 75 (175)
Q Consensus 36 y~~~r~~~L~~~~W~Fa~~r~~L~~~~~~~~~~~~y~lP~ 75 (175)
|++.-+.+++ ++.+|-.++......--+++|+-.|..|+
T Consensus 24 YpdL~~dL~~-~Gf~fv~~~~~vp~~~gtPgY~Vrfl~~a 62 (63)
T 2cul_A 24 YPDLLEDLSR-LGFRFVEREGEVPETPSTPGYRVRYLAFH 62 (63)
T ss_dssp CSHHHHHHHH-TTCCEEEEEEEEC-----CCEEEEEEEEC
T ss_pred HHHHHHHHHH-CCCCCCEECCCCCCCCCCCCCEECCCCCC
T ss_conf 7899999997-69984402599999988768761544566
No 7
>>2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus} (A:1-159)
Probab=7.09 E-value=1.4e+02 Score=10.94 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=41.0
Q ss_pred HHHHCCCCCCCCCCCCC-------HHHHHHHHH---------HHHHHHHHHHHCCCCCEEEE-EECCCC---CCCCCCCE
Q ss_conf 99971821124336889-------789999999---------67999988640477511110-000345---67767650
Q gi|254781209|r 10 ALLKLGQRPLENWNERS-------LKADYCRLL---------LPPIHKGLLRSFSWSFATQS-MDLLPL---YFTYNGEL 69 (175)
Q Consensus 10 aL~~iG~~~I~sl~e~t-------~~A~~~~~~---------y~~~r~~~L~~~~W~Fa~~r-~~L~~~---~~~~~~~~ 69 (175)
-|.+++-.|-.+..+.+ +-...++.. ++++|+..|. .| ..-. +..+++ .|++...+
T Consensus 39 LLAla~lkp~~~W~~a~np~l~i~~iM~~~r~~Y~k~YApNTREtiRr~tlh--qf--v~agiv~~NpD~P~rp~NSpk~ 114 (159)
T 2ixs_A 39 LLALAGLKPGDHWADSTTPRLGVQKIMDWSGAYWAKPYATGSREDFRKKTLR--QW--VDNGFAVLNPDNLNIATNSQLN 114 (159)
T ss_dssp HHHHTTCCTTCBGGGCCCCCEEHHHHHHHHHHHSSCCCCGGGHHHHHHHTHH--HH--HHTTSEEECTTCCSCCTTCTTC
T ss_pred HHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH--HH--HHCCEEEECCCCCCCCCCCCCC
T ss_conf 9997189999965664184126419999999864976787775527888799--99--8725237777779998889986
Q ss_pred EEECCCCCEEEEECCCCC
Q ss_conf 465485500023204566
Q gi|254781209|r 70 KYYIPLKCLKVLNTSEET 87 (175)
Q Consensus 70 ~y~lP~D~lrv~~v~~~~ 87 (175)
.|+|-.+.+.++..+...
T Consensus 115 ~Y~l~~e~l~ll~~ygt~ 132 (159)
T 2ixs_A 115 EYCLSDEAAQAIRSYGTD 132 (159)
T ss_dssp EEEECHHHHHHHHHTTST
T ss_pred CCCCCHHHHHHHHHCCCH
T ss_conf 240589999999854856
No 8
>>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A* (A:399-532)
Probab=7.03 E-value=1.4e+02 Score=10.92 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=18.6
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 997182112433688978999999
Q gi|254781209|r 11 LLKLGQRPLENWNERSLKADYCRL 34 (175)
Q Consensus 11 L~~iG~~~I~sl~e~t~~A~~~~~ 34 (175)
|.=.|..||..+=|+...|++++.
T Consensus 34 L~G~G~v~i~nlMEDaATAEISR~ 57 (134)
T 3cuz_A 34 ISGNGCVPIYGLMEDAATAEISRT 57 (134)
T ss_dssp HTTCCSEEETTEEECHHHHHHHHH
T ss_pred HCCCCCEEECCHHHHHHHHHHHHH
T ss_conf 819981201670266789999999
No 9
>>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis} (A:395-528)
Probab=6.89 E-value=1.4e+02 Score=10.88 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=18.9
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 997182112433688978999999
Q gi|254781209|r 11 LLKLGQRPLENWNERSLKADYCRL 34 (175)
Q Consensus 11 L~~iG~~~I~sl~e~t~~A~~~~~ 34 (175)
|.=.|..||..+=|+...|++++.
T Consensus 34 L~G~G~v~i~nLMEDaATAEISR~ 57 (134)
T 3cux_A 34 LSGRGAAPIYNLMEDAATAEISRA 57 (134)
T ss_dssp HTTCCSEEETTEEECHHHHHHHHH
T ss_pred HCCCCEEEECCEEHHHHHHHHHHH
T ss_conf 839980554783043889999999
No 10
>>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} (A:89-252,A:305-368)
Probab=6.86 E-value=1.4e+02 Score=10.87 Aligned_cols=52 Identities=12% Similarity=-0.056 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHCCCCC--CC-CCC--------CCCHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 988999999999718211--24-336--------88978999999967999988640477511
Q gi|254781209|r 1 MTELEICNWALLKLGQRP--LE-NWN--------ERSLKADYCRLLLPPIHKGLLRSFSWSFA 52 (175)
Q Consensus 1 ~T~l~i~N~aL~~iG~~~--I~-sl~--------e~t~~A~~~~~~y~~~r~~~L~~~~W~Fa 52 (175)
+|+=+++..++..+.+.. .+ ++. ......++-..+.+.+.+++||-||+.|-
T Consensus 106 lt~~ei~~~~~~~l~AG~dTta~~l~~~l~~La~~Pevq~klr~Eil~avi~EtLRl~P~~~~ 168 (228)
T 1io7_A 106 LSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNLWQRIREENLYLKAIEEALRYSPNPHL 168 (228)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTCHHHHHHHTCHHHHHHHHHHHSCCCCC
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999998153356778999999850005666653245543446877513779977
Done!