Query gi|254781209|ref|YP_003065622.1| hypothetical protein CLIBASIA_05580 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 175 No_of_seqs 109 out of 402 Neff 7.9 Searched_HMMs 13730 Date Wed Jun 1 11:48:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781209.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2joza1 b.60.1.1 (A:2-127) Hyp 4.8 76 0.0055 10.1 2.7 30 64-93 49-78 (126) 2 d3bzka5 c.55.3.13 (A:325-473) 4.1 91 0.0067 9.7 1.2 25 112-138 111-135 (149) 3 d1jlia_ a.26.1.2 (A:) Interleu 4.0 92 0.0067 9.7 3.3 42 5-46 5-47 (112) 4 d1p2za2 b.121.2.2 (A:651-962) 3.6 1.1E+02 0.0077 9.3 1.2 14 47-60 41-54 (312) 5 d1wxxa1 b.122.1.9 (A:1-64) Hyp 3.5 1.1E+02 0.0079 9.2 0.6 16 41-56 11-26 (64) 6 d1k3ia1 b.1.18.2 (A:538-639) G 3.4 1.1E+02 0.0081 9.2 1.3 30 46-76 43-72 (102) 7 d2fpna1 d.129.10.1 (A:1-214) H 3.2 1.2E+02 0.009 8.9 2.2 114 39-156 11-152 (214) 8 d1k8ib2 d.19.1.1 (B:1-94) Clas 3.2 1.2E+02 0.009 8.9 4.5 36 124-159 48-83 (94) 9 d1rp3a3 a.177.1.1 (A:0-86) Sig 3.0 1.3E+02 0.0095 8.8 3.7 43 125-167 22-64 (87) 10 d1m0sa1 c.124.1.4 (A:1-126,A:1 3.0 1.3E+02 0.0095 8.8 2.7 35 1-35 1-39 (147) No 1 >d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus subtilis [TaxId: 1423]} Probab=4.83 E-value=76 Score=10.15 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=22.2 Q ss_pred CCCCCEEEECCCCCEEEEECCCCCCCCCCE Q ss_conf 767650465485500023204566312312 Q gi|254781209|r 64 TYNGELKYYIPLKCLKVLNTSEETQLRGRC 93 (175) Q Consensus 64 ~~~~~~~y~lP~D~lrv~~v~~~~~~~~~~ 93 (175) .-......++|.+..+|+..+.++.++-.. T Consensus 49 v~~grgev~~p~~~ykvisq~tdgsiei~y 78 (126) T d2joza1 49 VMEGRGEVQLPFMAYKVISQSTDGSIEIQY 78 (126) T ss_dssp EETTTEEEECCCEEEEEEECCSSSEEEEEE T ss_pred HHCCCCEEECHHHHHHHHHCCCCCEEEEEE T ss_conf 550674040504656640026887188897 No 2 >d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Probab=4.05 E-value=91 Score=9.68 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=17.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 786675599999999999999957752 Q gi|254781209|r 112 VPLSDCDPLYQEAFALKLAGELCPPLI 138 (175) Q Consensus 112 ~~~~~~p~~f~~~i~~~lA~~~A~~it 138 (175) .+|.++|+.++.+|+ +|+.+..|+. T Consensus 111 ~EfP~~~~~~R~AVs--iaRrlQdPL~ 135 (149) T d3bzka5 111 KEFPELDVSLRGAVS--IARRLQDPLA 135 (149) T ss_dssp HHCTTSCHHHHHHHH--HHHHHHCHHH T ss_pred HHCCCCCHHHHHHHH--HHHHHHCHHH T ss_conf 877899863747788--8997558799 No 3 >d1jlia_ a.26.1.2 (A:) Interleukin-3 (IL-3) {Human (Homo sapiens) [TaxId: 9606]} Probab=4.04 E-value=92 Score=9.67 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=27.0 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHH Q ss_conf 9999999971821124336889789-99999967999988640 Q gi|254781209|r 5 EICNWALLKLGQRPLENWNERSLKA-DYCRLLLPPIHKGLLRS 46 (175) Q Consensus 5 ~i~N~aL~~iG~~~I~sl~e~t~~A-~~~~~~y~~~r~~~L~~ 46 (175) .+++-++.++.+.|..|.++++-.. .....+=...|+..|.. T Consensus 5 ~~~~EIi~~L~~pp~p~~~~~~lNs~dk~~L~~~~Lrr~NL~~ 47 (112) T d1jlia_ 5 IMIDEIIHHLKRPPNPLLDPNNLNSEDMDILMERNLRTPNLLA 47 (112) T ss_dssp HHHHHHHHHSCCCCCCCCCSCCCCHHHHHHHHSSTTHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHH T ss_conf 8999999866899998778787673889999887524102999 No 4 >d1p2za2 b.121.2.2 (A:651-962) Adenovirus hexon {Human adenovirus type 2 [TaxId: 10515]} Probab=3.59 E-value=1.1e+02 Score=9.30 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=9.0 Q ss_pred CCCCCEEEEEECCC Q ss_conf 47751111000034 Q gi|254781209|r 47 FSWSFATQSMDLLP 60 (175) Q Consensus 47 ~~W~Fa~~r~~L~~ 60 (175) .||+|+.-++..+| T Consensus 41 RGWSFtRlKa~ETP 54 (312) T d1p2za2 41 RGWAFTRLKTKETP 54 (312) T ss_dssp CEEEEEEEEGGGCC T ss_pred CCCCEEEECCCCCC T ss_conf 37332556033566 No 5 >d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=3.52 E-value=1.1e+02 Score=9.23 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=11.8 Q ss_pred HHHHHHCCCCCEEEEE Q ss_conf 9886404775111100 Q gi|254781209|r 41 KGLLRSFSWSFATQSM 56 (175) Q Consensus 41 ~~~L~~~~W~Fa~~r~ 56 (175) +.+++.|||=|.-.-. T Consensus 11 ~rl~~gHPWVf~~~i~ 26 (64) T d1wxxa1 11 ARLLSRHLWVFRRDVV 26 (64) T ss_dssp HHHHTTCCEECGGGEE T ss_pred HHHHCCCCCCHHHHHH T ss_conf 4766489610122441 No 6 >d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain {Fungi (Fusarium sp.) [TaxId: 29916]} Probab=3.44 E-value=1.1e+02 Score=9.17 Aligned_cols=30 Identities=7% Similarity=0.083 Sum_probs=14.9 Q ss_pred HCCCCCEEEEEECCCCCCCCCCCEEEECCCC Q ss_conf 0477511110000345677676504654855 Q gi|254781209|r 46 SFSWSFATQSMDLLPLYFTYNGELKYYIPLK 76 (175) Q Consensus 46 ~~~W~Fa~~r~~L~~~~~~~~~~~~y~lP~D 76 (175) .|.+++..|+..|.- +...++.+....|.| T Consensus 43 THs~~~~QR~v~L~~-~~~~~~~~~v~~P~~ 72 (102) T d1k3ia1 43 THTVNTDQRRIPLTL-TNNGGNSYSFQVPSD 72 (102) T ss_dssp ETTBCSSCCEEECCE-EEEETTEEEEECCSC T ss_pred CCCCCCCCCEEECEE-EECCCCEEEEECCCC T ss_conf 406768877885505-853898899984999 No 7 >d2fpna1 d.129.10.1 (A:1-214) Hypothetical protein YwmB {Bacillus subtilis [TaxId: 1423]} Probab=3.18 E-value=1.2e+02 Score=8.92 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=46.5 Q ss_pred HHHHHHHHCCCCCEEEEEECCC-------------CCCCCCCCEEEECCCCCEE-EEECC--CCCCC-CCC-EEEECCCC Q ss_conf 9998864047751111000034-------------5677676504654855000-23204--56631-231-25430478 Q gi|254781209|r 39 IHKGLLRSFSWSFATQSMDLLP-------------LYFTYNGELKYYIPLKCLK-VLNTS--EETQL-RGR-CIVARGDT 100 (175) Q Consensus 39 ~r~~~L~~~~W~Fa~~r~~L~~-------------~~~~~~~~~~y~lP~D~lr-v~~v~--~~~~~-~~~-~~~~~~~~ 100 (175) .++.-..-..|.+.+|...... ..+.+.|. + .+.++.. +...+ ..... +.- ...+...+ T Consensus 11 ~~~~~~~i~~Wt~~are~~~~s~~~~~~k~~~l~~~~~~~~w~--~-~~~~~~~k~~g~~t~~~~~~~~~i~~v~t~~~~ 87 (214) T d2fpna1 11 MERQDVSIDKWTLHAKQNLSLTEKEFYQKVQRLKQEYRQYDWV--I-AREDKMIKAIGTYTDKKNRTSFRLQLVTTLKKH 87 (214) T ss_dssp HHHTTEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCTTCEEE--E-ECCSSEEEEEEEEEETTTTEEEEEEEEEESSCS T ss_pred HHHCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHCCCCEEE--E-CCCCCCEEEEEEEECCCCCEEEEEEEEEEECCC T ss_conf 9864846877676545437626388999999997555452424--4-135671278877754887403689999974279 Q ss_pred CCEEEEEEEEC-CCH-HHHHHHHHHHHHHHHHHHHH------HHHCC--CHHHHHHHHHHHHHHHH Q ss_conf 77089999971-786-67559999999999999995------77529--68999999999999999 Q gi|254781209|r 101 PRPLSLKYIGE-VPL-SDCDPLYQEAFALKLAGELC------PPLIM--DDQMRSYLKGESERVLA 156 (175) Q Consensus 101 ~~~~~~~yv~~-~~~-~~~p~~f~~~i~~~lA~~~A------~~itg--~~~l~~~l~q~~~~~l~ 156 (175) ....|+-|-.. ..+ +.|..... -+..++...|. .-|+| ++.+...+.+.....+. T Consensus 88 ~~~syllye~~g~~~~~~~~~~~~-~~~r~~~~lf~~~p~i~tci~G~~~~kl~~~l~~~~~~~l~ 152 (214) T d2fpna1 88 NPTSYLLYEQMSLETPDSWNDTYE-QFERETLGIFQEKVVIFTCLNGHLDDNMNIVLQKKANQLLN 152 (214) T ss_dssp SCCEEEEEEEEESSCCSCHHHHHH-HHHHHHHHHHSSCCCEEEEEEEEECCCHHHHHHHHHHHHHH T ss_pred CCEEEEEEEECCCCCHHHHHHHHH-HHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHH T ss_conf 961899999548894177789999-99999877743895499999888577422799999999999 No 8 >d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]} Probab=3.16 E-value=1.2e+02 Score=8.90 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999957752968999999999999999999 Q gi|254781209|r 124 AFALKLAGELCPPLIMDDQMRSYLKGESERVLAVAM 159 (175) Q Consensus 124 ~i~~~lA~~~A~~itg~~~l~~~l~q~~~~~l~~A~ 159 (175) -+-+.+|..++.-+-.+.++.|.+++.-+..-..++ T Consensus 48 g~L~~~A~~is~~LN~~~~lvqRl~~glq~C~~htq 83 (94) T d1k8ib2 48 GVLSRLAEIISNILNEQESLIHRLQNGLQDCATHTQ 83 (94) T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHTHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 889999999999974670899999865777899888 No 9 >d1rp3a3 a.177.1.1 (A:0-86) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Probab=3.02 E-value=1.3e+02 Score=8.76 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9999999995775296899999999999999999983221787 Q gi|254781209|r 125 FALKLAGELCPPLIMDDQMRSYLKGESERVLAVAMDMDGVEIP 167 (175) Q Consensus 125 i~~~lA~~~A~~itg~~~l~~~l~q~~~~~l~~A~~~Da~q~~ 167 (175) ++.+.|.++...+..+-+..+..+......+..+..+|...+. T Consensus 22 LV~~ia~~~~~~~~~~~e~eDL~q~G~igL~~A~~~yd~~~g~ 64 (87) T d1rp3a3 22 LVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPK 64 (87) T ss_dssp HHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTH T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 9999999986658899988999989999999999964877899 No 10 >d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Probab=3.02 E-value=1.3e+02 Score=8.76 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=0.0 Q ss_pred CCHHH----HHHHHHHHCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 98899----999999971821124336889789999999 Q gi|254781209|r 1 MTELE----ICNWALLKLGQRPLENWNERSLKADYCRLL 35 (175) Q Consensus 1 ~T~l~----i~N~aL~~iG~~~I~sl~e~t~~A~~~~~~ 35 (175) |++++ |+-.|+.+|.+..+--|+.||.....++.+ T Consensus 1 m~~~e~K~~IA~~A~~lI~dg~~I~LdsGTT~~~la~~L 39 (147) T d1m0sa1 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEAL 39 (147) T ss_dssp CCHHHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH T ss_conf 986999999999999768999999988863699999998 Done!