RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781209|ref|YP_003065622.1| hypothetical protein
CLIBASIA_05580 [Candidatus Liberibacter asiaticus str. psy62]
         (175 letters)



>gnl|CDD|39965 KOG4768, KOG4768, KOG4768, Mitochondrial mRNA maturase [RNA
           processing and modification].
          Length = 796

 Score = 26.9 bits (59), Expect = 3.2
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 15  GQRPLENWNERSLKADYC-RLLLPPIHKGLLRSFSWSF 51
           G+RPL   N R      C R+ L  I+ G   + S  F
Sbjct: 302 GERPLSVGNPRDKLVQECMRMGLEIIYGGEFSTVSHGF 339


>gnl|CDD|48363 cd02033, BchX, Chlorophyllide reductase converts chlorophylls into
           bacteriochlorophylls by reducing the chlorin B-ring.
           This family contains the X subunit of this three-subunit
           enzyme. Sequence and structure similarity between bchX,
           protochlorophyllide reductase L subunit (bchL and chlL)
           and nitrogenase Fe protein (nifH gene) suggest their
           functional similarity. Members of the BchX family serve
           as the unique electron donors to their respective
           catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase
           component 1). Mechanistically, they hydrolyze ATP and
           transfer electrons through a Fe4-S4 cluster..
          Length = 329

 Score = 25.8 bits (56), Expect = 6.5
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 111 EVPLSDCDPLYQEAFALKLAGELCPPLIMDDQMRSYLKGESERVLAVAMDMDGV 164
            V L  CDP   +  +L   G+ CP +I +   +  L GE  ++  V    DGV
Sbjct: 61  RVLLIGCDP-KSDTTSLLFGGKACPTII-ETSAKKKLAGEEVQIGDVCFKRDGV 112


>gnl|CDD|31871 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport
           and metabolism / Coenzyme metabolism].
          Length = 278

 Score = 26.0 bits (57), Expect = 6.6
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 87  TQLRGRCIVARGDTPRPLSLKYI--GEVPLSDCD--------PLYQEAFALKLAGELCPP 136
           T  R   I+ R D P    L      +   ++ D        P+ +EAF L L GE    
Sbjct: 145 TDNRKMRILRRLDLPELTVLILAPGEKRLSANVDVNRLRLIAPVVEEAFRLALKGEYFKA 204

Query: 137 LIMD 140
           ++++
Sbjct: 205 MVLN 208


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,216,920
Number of extensions: 109698
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 5
Length of query: 175
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,383,754
Effective search space: 385770352
Effective search space used: 385770352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)