RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781209|ref|YP_003065622.1| hypothetical protein
CLIBASIA_05580 [Candidatus Liberibacter asiaticus str. psy62]
         (175 letters)



>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
          flavoenzymes, nicotine degradation; HET: FAD GP7; 1.95A
          {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3k7t_A*
          (X:85-193,X:276-360)
          Length = 194

 Score = 26.8 bits (59), Expect = 1.8
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 17 RPLENWNERSLK---ADYC-RLLLPPIHKGLLRSFSWSFATQSMD 57
          + LEN +   L     +Y  +L LPP+ +  L +++W+   Q  D
Sbjct: 45 KGLENQDLEDLDIPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPAD 89


>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating
           enzyme, structural genomics, riken structural
           genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
           (A:)
          Length = 92

 Score = 25.9 bits (57), Expect = 3.3
 Identities = 4/22 (18%), Positives = 10/22 (45%)

Query: 92  RCIVARGDTPRPLSLKYIGEVP 113
           R  +  G+T    ++ +   +P
Sbjct: 15  RVSLKVGETIESGTVIFCDVLP 36


>3ecf_A NTF2-like protein; YP_324687.1, structural genomics, joint
           center for structural genomics, JCSG, protein structure
           initiative; 1.90A {Anabaena variabilis atcc 29413} (A:)
          Length = 130

 Score = 24.9 bits (54), Expect = 5.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 136 PLIMDDQMRSYLKGESERVLAVAMDMDGVEIPEDRG 171
            L   +++  +LKG + RV  V +    VE P   G
Sbjct: 42  TLKGTEEVIPFLKGVTTRVAEVNIXSTTVEYPRASG 77


>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
           hydrolase; 1.53A {Homo sapiens} (A:)
          Length = 225

 Score = 24.8 bits (52), Expect = 7.5
 Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 4/30 (13%)

Query: 148 KGESERVL----AVAMDMDGVEIPEDRGYH 173
             E  ++     AV  D+D   I E+    
Sbjct: 4   HSELRKLFYSADAVCFDVDSTVIREEGIDE 33


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,374,528
Number of extensions: 57510
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 4
Length of query: 175
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 92
Effective length of database: 2,150,234
Effective search space: 197821528
Effective search space used: 197821528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)