RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781209|ref|YP_003065622.1| hypothetical protein CLIBASIA_05580 [Candidatus Liberibacter asiaticus str. psy62] (175 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 48.4 bits (115), Expect = 9e-07 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 31/123 (25%) Query: 57 DLLPLYFTYNGELKYYIPL--KCLKVLNTSEETQ----LRGRCIVA--RGDTPRPLSLKY 108 +L LY TY+ + I + L L + +G I+ + P Y Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDY 230 Query: 109 IGEVPLSDCDPL--------YQEAFALKLAGELCPPLIMDDQMRSYLK---GESER-VLA 156 + +P+S C PL Y KL G P ++RSYLK G S+ V A Sbjct: 231 LLSIPIS-C-PLIGVIQLAHY--VVTAKLLG-FTPG-----ELRSYLKGATGHSQGLVTA 280 Query: 157 VAM 159 VA+ Sbjct: 281 VAI 283 Score = 42.2 bits (99), Expect = 7e-05 Identities = 40/248 (16%), Positives = 57/248 (22%), Gaps = 134/248 (54%) Query: 29 ADY---CRLL-LPPIHKGLLRSF---------------------SW-SFATQSMDLLPLY 62 A Y +LL P G LRS+ SW SF + + Sbjct: 247 AHYVVTAKLLGFTP---GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303 Query: 63 FTYNGELKYYIPLKCL----------KVLNTSEETQLRGRCIVARG-DTPRP-LSL---- 106 F +I ++C +L S E P P LS+ Sbjct: 304 F--------FIGVRCYEAYPNTSLPPSILEDSLE----------NNEGVPSPMLSISNLT 345 Query: 107 -----KYIGEV--------------------------PLSDCDPLYQEAFALKLAGELCP 135 Y+ + P S LY L L P Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS----LY--GLNLTLRKAKAP 399 Query: 136 PLIMDDQMR-----------------------SYLKGESERVLAVAMDM--DGVEI-PED 169 + DQ R L S+ + D+ + V +D Sbjct: 400 SGL--DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK---DLVKNNVSFNAKD 454 Query: 170 RG---YHN 174 Y Sbjct: 455 IQIPVYDT 462 Score = 34.1 bits (78), Expect = 0.015 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 27/126 (21%) Query: 44 LRSFSWSFAT--QSMDLLP--LYFTYNGELKYYIPLKCLKVLNTSEETQLRGRCIVARGD 99 R + S + + L+P +F + +L+ + K+L E A D Sbjct: 6 TRPLTLSHGSLEHVL-LVPTASFFIAS-QLQE----QFNKILPEPTEG-------FAADD 52 Query: 100 TPR-PLSL--KYIGEVPLSDCDPLYQEAFALKLAGELCPPLIMDDQMRSYLKGESERVLA 156 P P L K++G V S +P F L L + + YL+G LA Sbjct: 53 EPTTPAELVGKFLGYV-SSLVEPSKVGQFDQVLN------LCLTEFENCYLEGNDIHALA 105 Query: 157 VAMDMD 162 + + Sbjct: 106 AKLLQE 111 Score = 32.6 bits (74), Expect = 0.052 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 36/98 (36%) Query: 102 RPLSLKYIGE------VP---LSDCDPLYQEAFALKLAGELCPPLIMDDQMRS------- 145 RPL+L + G VP L QE F L E DD+ + Sbjct: 7 RPLTLSH-GSLEHVLLVPTASFFIASQL-QEQFNKILP-EPTEGFAADDEPTTPAELVGK 63 Query: 146 YL-----------KGESERVLAVAMD------MDGVEI 166 +L G+ ++VL + + ++G +I Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101 Score = 30.3 bits (68), Expect = 0.25 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 23/62 (37%) Query: 24 ERSLKADYCRLLLP---PIHKGLL-------------RSFSWSFATQSMDL-LPLYFTYN 66 ER LK R L P P H LL + S++ + D+ +P+Y T++ Sbjct: 411 ERKLKFSN-RFL-PVASPFHSHLLVPASDLINKDLVKNNVSFN----AKDIQIPVYDTFD 464 Query: 67 GE 68 G Sbjct: 465 GS 466 >1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 92 Score = 27.1 bits (60), Expect = 2.0 Identities = 4/22 (18%), Positives = 10/22 (45%) Query: 92 RCIVARGDTPRPLSLKYIGEVP 113 R + G+T ++ + +P Sbjct: 15 RVSLKVGETIESGTVIFCDVLP 36 >1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis; HET: CME; 1.65A {Escherichia coli} SCOP: d.153.1.5 PDB: 1jn9_A* 1t3m_A 2zal_A Length = 177 Score = 26.8 bits (59), Expect = 2.7 Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 4/52 (7%) Query: 123 EAFALKLAGELCPP--LIMDDQMRSYLKGESERVLAVAMDMDGVEIPEDRGY 172 E FA E P + L E A +D G + E + Sbjct: 127 ENFAFARGMERVSPEIFSTSLRYEQLLAARKEG--ATVLDHSGAPLDEKQKM 176 >2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A* Length = 759 Score = 25.5 bits (56), Expect = 6.2 Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 43 LLRSFSWSFATQSMDLLPLYFT--YNGELKYYIPLKCLKVLNTSEETQ 88 L R + A+ + D + + E+ ++ V+N +++ Q Sbjct: 680 LERVLFY--ASHNEDKYAAWSSSNPECEVAHFPEQGLYCVINNTDQPQ 725 >2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Score = 25.6 bits (55), Expect = 6.7 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 33 RLLLPPIHKGLLRSFSWSFATQSMDLLPLYFTYNGELKYYIPL 75 R P I KG + T D L L++ + + ++ + Sbjct: 21 RTYRPEIKKGSYNNIVVHVKTAVADNL-LFYLGSAKFIDFLAI 62 >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 Score = 25.5 bits (56), Expect = 7.6 Identities = 12/47 (25%), Positives = 19/47 (40%) Query: 73 IPLKCLKVLNTSEETQLRGRCIVARGDTPRPLSLKYIGEVPLSDCDP 119 IP +V T+ + Q V +G+ P K +G L+ P Sbjct: 387 IPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPP 433 >2ewf_A Nicking endonuclease N.BSPD6I; helix-turn-helix, beta-alpha-barrel, hydrolase; 1.84A {Bacillus SP} Length = 610 Score = 25.0 bits (54), Expect = 8.7 Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 23 NERSLKADYCRLLLPPIHKGLLRSFSWSFATQSMDLLPLYF 63 + K YC + P I+K F Q+ ++PL Sbjct: 505 KQGVEKELYCLFIAPEINKNTFEEFMKYNIVQNTRIIPLSL 545 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 25.3 bits (54), Expect = 8.8 Identities = 5/11 (45%), Positives = 8/11 (72%) Query: 15 GQRPLENWNER 25 ++ LE WN+R Sbjct: 116 AKKDLEEWNQR 126 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.140 0.437 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,540,072 Number of extensions: 65480 Number of successful extensions: 166 Number of sequences better than 10.0: 1 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 12 Length of query: 175 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 89 Effective length of database: 3,608,246 Effective search space: 321133894 Effective search space used: 321133894 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.9 bits)