HHsearch alignment for GI: 254781210 and conserved domain: PHA02514
>PHA02514 minor capsid protein; Reviewed.
Probab=100.00 E-value=0 Score=411.29 Aligned_cols=317 Identities=14% Similarity=0.122 Sum_probs=257.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEEECCCCCCCCC-CCCCCCEEEEEECCCCCH-
Q ss_conf 279998867789999987112430100230312674068713462355332589874324-568762699982344311-
Q gi|254781210|r 8 ATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVGDMPDTIY-NATDQDRRWVGHSQFGWA- 85 (343)
Q Consensus 8 ~~aFv~q~~~~v~~a~qqk~s~L~~~V~~~t~~~Gks~~f~~~G~~~A~~~t~r~~~t~~-~~~~~~~~~v~~~~~~~a- 85 (343)
T Consensus 25 ~ALfLK~FsGEvltaF~~~-~i~~~~~~~Rti~~GKSaqFp~tGr~~A~YHtpG~~i~~~~~~i~~~Ek~I~iDdlLis~ 103 (397)
T PHA02514 25 LALFLKVFGGEVLTAFART-SVTTSRHMVRSISSGKSAQFPVLGRTQAAYLAPGENLDDKRKDIKHTEKVITIDGLLTAD 103 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHCCEEEEECCCCCEEECEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCEEEHH
T ss_conf 5568776018889999887-533023157752688334210530331020479875668888876550599974222136
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCEEEECCCCCC-------CCC
Q ss_conf 2212688887410068999999999987768899999862014556666654-45666640230235776-------422
Q gi|254781210|r 86 ERIDPFATLDSGINPLLPYASLATAAMHRKQDEAILKGMLGVNKKGKIGAET-EFFSKENILSAVEGDDF-------FKT 157 (343)
Q Consensus 86 ~~IddiDe~k~~~d~rs~y~~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~-~~~~~~~~~~~~~~~~~-------~~l 157 (343)
T Consensus 104 ~fi~~ide~~~hydvRs~ys~e~G~aLA~~~Dr~Ifr~ia~~a~~~~~~~~~i~g~g~~~~~~~~~~~~~~~d~~~~g~a 183 (397)
T PHA02514 104 VLIYDIEDAMNHYDVRSEYTSQLGESLAMAADGAVLAEIAGLCNVESQYNENIEGLGTATVIETTQPKTTLTDQVALGKE 183 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 77860899985456889999999999999988999999998742566555443688864267403566543456677999
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 28999999998602388975460799769999987506710100000134311367012274358997077787666654
Q gi|254781210|r 158 FIGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPA 237 (343)
Q Consensus 158 t~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~ 237 (343)
T Consensus 184 LI~AfydAAa~LDEk~VP~~g--RvavL~PrQYYaLi~av~~N~~n~~g~~~~~~G~I~~I~G~~i~~ip~l~~~gag~~ 261 (397)
T PHA02514 184 IIAALTKARAALTKNYVPAAD--RVFYCDPDSYSAILAALMPNAANYAALIDPEKGSIRNVMGFEVVEVPHLTAGGAGTT 261 (397)
T ss_pred HHHHHHHHHHHHHHCCCCCCC--CEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 999999999984215899788--189978899999998650344230013577787030565699852575045677766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCCCCHHEEEHEECCCCEEEC
Q ss_conf 44333334565566777666666665455655137999845410344513531565541653203300010002635654
Q gi|254781210|r 238 GTKFPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKWHAPQITLTSSFGATRIE 317 (343)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~k~~a~~i~~~~s~Ga~~l~ 317 (343)
T Consensus 262 ~~~~--------tg~~~~~~~t~~~~~~~a~~N~~GLIfhksAaGtVKlidpqVE~t~~V~-yQGdLIVaKyAMGhG~LR 332 (397)
T PHA02514 262 REGT--------TGQKHAFPATKSGNVKVAKDNVIGLFMHRSAVGTVKLRDLALERARRAN-FQADQIIAKYAMGHGGLR 332 (397)
T ss_pred CCCC--------CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEEEE-EHHHHHHHHHHCCCCCCC
T ss_conf 6666--------6777778887676432112434689971020068985043024554333-104689999863578789
Q ss_pred CCCEEEEEECHHHHCCCEE
Q ss_conf 1525899954133225300
Q gi|254781210|r 318 PDKILGIEISKDSLKGVPV 336 (343)
Q Consensus 318 ~~~vv~I~~~e~~~~~~~~ 336 (343)
T Consensus 333 PeAA~alv~~~~~~~~~~~ 351 (397)
T PHA02514 333 PEAAGAVVFQKGVMLGVTS 351 (397)
T ss_pred HHHHHHEEHHCCCEECCCC
T ss_conf 6774221101450203333