HHsearch alignment for GI: 254781210 and conserved domain: PHA02514

>PHA02514 minor capsid protein; Reviewed.
Probab=100.00  E-value=0  Score=411.29  Aligned_cols=317  Identities=14%  Similarity=0.122  Sum_probs=257.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEEECCCCCCCCC-CCCCCCEEEEEECCCCCH-
Q ss_conf             279998867789999987112430100230312674068713462355332589874324-568762699982344311-
Q gi|254781210|r    8 ATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVGDMPDTIY-NATDQDRRWVGHSQFGWA-   85 (343)
Q Consensus         8 ~~aFv~q~~~~v~~a~qqk~s~L~~~V~~~t~~~Gks~~f~~~G~~~A~~~t~r~~~t~~-~~~~~~~~~v~~~~~~~a-   85 (343)
T Consensus        25 ~ALfLK~FsGEvltaF~~~-~i~~~~~~~Rti~~GKSaqFp~tGr~~A~YHtpG~~i~~~~~~i~~~Ek~I~iDdlLis~  103 (397)
T PHA02514         25 LALFLKVFGGEVLTAFART-SVTTSRHMVRSISSGKSAQFPVLGRTQAAYLAPGENLDDKRKDIKHTEKVITIDGLLTAD  103 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHCCEEEEECCCCCEEECEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCEEEHH
T ss_conf             5568776018889999887-533023157752688334210530331020479875668888876550599974222136


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCEEEECCCCCC-------CCC
Q ss_conf             2212688887410068999999999987768899999862014556666654-45666640230235776-------422
Q gi|254781210|r   86 ERIDPFATLDSGINPLLPYASLATAAMHRKQDEAILKGMLGVNKKGKIGAET-EFFSKENILSAVEGDDF-------FKT  157 (343)
Q Consensus        86 ~~IddiDe~k~~~d~rs~y~~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~-~~~~~~~~~~~~~~~~~-------~~l  157 (343)
T Consensus       104 ~fi~~ide~~~hydvRs~ys~e~G~aLA~~~Dr~Ifr~ia~~a~~~~~~~~~i~g~g~~~~~~~~~~~~~~~d~~~~g~a  183 (397)
T PHA02514        104 VLIYDIEDAMNHYDVRSEYTSQLGESLAMAADGAVLAEIAGLCNVESQYNENIEGLGTATVIETTQPKTTLTDQVALGKE  183 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf             77860899985456889999999999999988999999998742566555443688864267403566543456677999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             28999999998602388975460799769999987506710100000134311367012274358997077787666654
Q gi|254781210|r  158 FIGQLITAKSIFRKRYIDVDSEQVYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPA  237 (343)
Q Consensus       158 t~akl~~a~~~ld~~~Vp~~g~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~  237 (343)
T Consensus       184 LI~AfydAAa~LDEk~VP~~g--RvavL~PrQYYaLi~av~~N~~n~~g~~~~~~G~I~~I~G~~i~~ip~l~~~gag~~  261 (397)
T PHA02514        184 IIAALTKARAALTKNYVPAAD--RVFYCDPDSYSAILAALMPNAANYAALIDPEKGSIRNVMGFEVVEVPHLTAGGAGTT  261 (397)
T ss_pred             HHHHHHHHHHHHHHCCCCCCC--CEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf             999999999984215899788--189978899999998650344230013577787030565699852575045677766


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCCCCHHEEEHEECCCCEEEC
Q ss_conf             44333334565566777666666665455655137999845410344513531565541653203300010002635654
Q gi|254781210|r  238 GTKFPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKWHAPQITLTSSFGATRIE  317 (343)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~k~~a~~i~~~~s~Ga~~l~  317 (343)
T Consensus       262 ~~~~--------tg~~~~~~~t~~~~~~~a~~N~~GLIfhksAaGtVKlidpqVE~t~~V~-yQGdLIVaKyAMGhG~LR  332 (397)
T PHA02514        262 REGT--------TGQKHAFPATKSGNVKVAKDNVIGLFMHRSAVGTVKLRDLALERARRAN-FQADQIIAKYAMGHGGLR  332 (397)
T ss_pred             CCCC--------CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEEEE-EHHHHHHHHHHCCCCCCC
T ss_conf             6666--------6777778887676432112434689971020068985043024554333-104689999863578789


Q ss_pred             CCCEEEEEECHHHHCCCEE
Q ss_conf             1525899954133225300
Q gi|254781210|r  318 PDKILGIEISKDSLKGVPV  336 (343)
Q Consensus       318 ~~~vv~I~~~e~~~~~~~~  336 (343)
T Consensus       333 PeAA~alv~~~~~~~~~~~  351 (397)
T PHA02514        333 PEAAGAVVFQKGVMLGVTS  351 (397)
T ss_pred             HHHHHHEEHHCCCEECCCC
T ss_conf             6774221101450203333