HHsearch alignment of GI: 254781210 and MMDB domain: 1ohg_A_
>1ohg_A (A:) Major capsid protein; virus, virus coat protein, virus/viral protein, auto- catalytic cross-LINK, icosahedral virus; 3.45A {Bacteriophage HK97}
Probab=99.14 E-value=1.2e-08 Score=67.35 Aligned_cols=252 Identities=9% Similarity=-0.007 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHCCEECCCCCCCEEEEECCC--CEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9998711243010023031267406871346--23553325898743245687626999823443112212688887410
Q gi|254781210|r 21 LALQETKSKLRPTVTEQATEGEASALVEVFK--PTEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGI 98 (343)
Q Consensus 21 ~a~qqk~s~L~~~V~~~t~~~Gks~~f~~~G--~~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~~IddiDe~k~~~ 98 (343)
....+ .+.++..++..++.++ +..+++.. ...+....++ ...+..+...+........+.....| ..+-++...
T Consensus 23 ~~~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~a~~v~E~-~~~~~~~~~~~~v~~~~~k~~~~~~i-s~ell~~~~ 98 (282)
T 1ohg_A 23 MPGLR-RLTIRDLLAQGRTSSN-ALEYVREEVFTNNADVVAEK-ALKPESDITFSKQTANVKTIAHWVQA-SRQVMDDAP 98 (282)
T ss_dssp CCCCC-CCCSGGGSEEEECCSS-EEEEEEEEEEECCCEEECTT-CCCCBCEEEEEEEEEECEEEEEEEEE-EHHHHHHST
T ss_pred HHHHC-HHHHHHHCCEEEECCC-CEEEEEEECCCCCEEEECCC-CCCCCCCCCCCCEEEEEEEEEEEECC-CHHHHHHHH
T ss_conf 75403-0457865053763799-67988783576744886158-86765645423135111899999647-989975179
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 06899999999998776889999986201455666665445666640230235776422289999999986023889754
Q gi|254781210|r 99 NPLLPYASLATAAMHRKQDEAILKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDS 178 (343)
Q Consensus 99 d~rs~y~~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~lt~akl~~a~~~ld~~~Vp~~g 178 (343)
|+.+...+.++.+++++.|+.++.... .....+ +..................+.+.+..+...+..++.+..
T Consensus 99 ~~~~~v~~~l~~~~a~~~d~~~~~g~g---~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~- 170 (282)
T 1ohg_A 99 MLQSYINNRLMYGLALKEEGQLLNGDG---TGDNLE----GLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSAS- 170 (282)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSCCC---STTSCC----CHHHHCEECCGGGCCTTCCHHHHHHHHHHHTGGGTSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCC----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-
T ss_conf 999999999999999997678860667---677755----421111121011123565414679999986764456675-
Q ss_pred CEEEEECCHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 60799769999987506710100000134311367012274358997077787666654443333345655667776666
Q gi|254781210|r 179 EQVYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTV 258 (343)
Q Consensus 179 ~~~~~v~~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (343)
. ++.+|..|..|.....-..+. -.....+|..++++|++++.++++|.+..
T Consensus 171 --~-~vm~~~~~~~l~~lkd~~g~~--l~~~~~~~~~~~l~G~pV~~~~~~~~~~~------------------------ 221 (282)
T 1ohg_A 171 --G-IVLNPRDWHNIALLKDNEGRY--IFGGPQAFTSNIMWGLPVVPTKAQAAGTF------------------------ 221 (282)
T ss_dssp --E-EEECHHHHHHHHTCBCTTSCB--TTTTTTSCCCSEETTEEEEECTTSCTTEE------------------------
T ss_pred --E-EEEEHHHHHHHHHEECCCCCE--EECCCCCCCCCEECCEEEEECCCCCCCEE------------------------
T ss_conf --5-998053644565212689966--53134557764035703787178876606------------------------
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCC---CCHHEEEHEECCCCEEECCCCEEEEEEC
Q ss_conf 66665455655137999845410344513531565541653---2033000100026356541525899954
Q gi|254781210|r 259 KSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGK---WHAPQITLTSSFGATRIEPDKILGIEIS 327 (343)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~k---~~a~~i~~~~s~Ga~~l~~~~vv~I~~~ 327 (343)
.+.=.++++......++.+++.+.+++ .....+..-+-+|...++|++++.++-.
T Consensus 222 --------------~~gd~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~a~~~~~~~ 279 (282)
T 1ohg_A 222 --------------TVGGFDMASQVWDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTFS 279 (282)
T ss_dssp --------------EEECHHHHEEEEESEEEEEEEESSSTTCTTTTEEEEEEEEEECEEESCGGGEEEEECC
T ss_pred --------------EEEECCCEEEEEEECCCEEEEECCCCHHHHCCEEEEEEEEEEEEEEECCCEEEEEEEE
T ss_conf --------------8850444179999124089995054106558909999999984377068829999983