HHsearch results for GI: 254781210 and protein with PDBid: 1ohg_A
>1ohg_A Major capsid protein; virus, virus coat protein, virus/viral protein, auto- catalytic cross-LINK, icosahedral virus; 3.45A {Bacteriophage HK97} SCOP: d.183.1.1 PDB: 2frp_A 2fsy_A 2ft1_A 2fte_A 3ddx_A 2gp1_A 2fs3_A 3e8k_A 1if0_A
Probab=98.98 E-value=1.3e-07 Score=60.75 Aligned_cols=247 Identities=10% Similarity=0.023 Sum_probs=142.9
Q ss_pred HHHHHCCEECCCCCCCEEEEECCCC--EEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2430100230312674068713462--35533258987432456876269998234431122126888874100689999
Q gi|254781210|r 28 SKLRPTVTEQATEGEASALVEVFKP--TEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYA 105 (343)
Q Consensus 28 s~L~~~V~~~t~~~Gks~~f~~~G~--~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~~IddiDe~k~~~d~rs~y~ 105 (343)
+.+|++++..+.. +.+..+|+... ..|....++ +..+..+...+.+......+..-..|.+.- ++--.+..+...
T Consensus 29 ~~vr~~~~~~~~~-~~~~~~~~~t~~~~~a~~v~Eg-~~~~~~~~~f~~v~~~~~k~~~~~~is~el-l~ds~~l~~~v~ 105 (282)
T 1ohg_A 29 LTIRDLLAQGRTS-SNALEYVREEVFTNNADVVAEK-ALKPESDITFSKQTANVKTIAHWVQASRQV-MDDAPMLQSYIN 105 (282)
T ss_dssp CCSGGGSEEEECC-SSEEEEEEEEEEECCCEEECTT-CCCCBCEEEEEEEEEECEEEEEEEEEEHHH-HHHSTTHHHHHH
T ss_pred HHHHHHHCEEEEC-CCCEEEEEEECCCCCEEEECCC-CCCCCCCCCEEEEEEEEEEEEEEECCCHHH-HHHHHHHHHHHH
T ss_conf 4478660626636-9868988884465741786478-877767553146886439999997389899-744899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 99999987768899999862014556666654456666402302357764222899999999860238897546079976
Q gi|254781210|r 106 SLATAAMHRKQDEAILKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQVYVLI 185 (343)
Q Consensus 106 ~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~lt~akl~~a~~~ld~~~Vp~~g~~~~~v~ 185 (343)
++++++++++.|+.++. |.......+ ...................+.+.+..++..++.++.+.. .| ++
T Consensus 106 ~~l~~~~~~~~d~a~l~---G~G~~~~~~----g~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~---~~-vm 174 (282)
T 1ohg_A 106 NRLMYGLALKEEGQLLN---GDGTGDNLE----GLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSAS---GI-VL 174 (282)
T ss_dssp HHHHHHHHHHHHHHHHS---CCCSTTSCC----CHHHHCEECCGGGCCTTCCHHHHHHHHHHHTGGGTSCCC---EE-EE
T ss_pred HHHHHHHHHHHHHHHHC---CCCCCCCCC----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC---EE-EE
T ss_conf 99999999986356310---668887656----421113332111223345314568999987775356676---59-99
Q ss_pred CHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999875067101000001343113670122743589970777876666544433333456556677766666666545
Q gi|254781210|r 186 PSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTVKSSAKFE 265 (343)
Q Consensus 186 ~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
+|..|..|.....-.. .|.- .....+.-++++|++++.++.+|..... -
T Consensus 175 n~~~~~~l~~lkd~~G-~~~~-~~~~~~~~~~l~G~Pv~~s~~v~~~~~~-----------------------------~ 223 (282)
T 1ohg_A 175 NPRDWHNIALLKDNEG-RYIF-GGPQAFTSNIMWGLPVVPTKAQAAGTFT-----------------------------V 223 (282)
T ss_dssp CHHHHHHHHTCBCTTS-CBTT-TTTTSCCCSEETTEEEEECTTSCTTEEE-----------------------------E
T ss_pred ECCHHHHHHHEECCCC-CEEE-CCCCCCCCCCCCCEEEEEECCCCCCCEE-----------------------------E
T ss_conf 3143444641036788-6530-3544467771066269972788766147-----------------------------6
Q ss_pred CCCCCEEEEEEECCCCEEEEECCCEEEEEECCCC-C--CHHEEEHEECCCCEEECCCCEEEEEECH
Q ss_conf 5655137999845410344513531565541653-2--0330001000263565415258999541
Q gi|254781210|r 266 DTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGK-W--HAPQITLTSSFGATRIEPDKILGIEISK 328 (343)
Q Consensus 266 ~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~k-~--~a~~i~~~~s~Ga~~l~~~~vv~I~~~e 328 (343)
+++ +.+..+....++.+++.+.... + .-..+.+.+-+|....+|+++|.++.+-
T Consensus 224 gdf---------~~~~~~~~r~~~~v~~~~~~~~~f~~~~v~~ra~~r~~~~v~~p~A~v~~~~~~ 280 (282)
T 1ohg_A 224 GGF---------DMASQVWDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTFSS 280 (282)
T ss_dssp ECH---------HHHEEEEESEEEEEEEESSSTTCTTTTEEEEEEEEEECEEESCGGGEEEEECCC
T ss_pred ECC---------CCEEEEEECCCCEEEEECCCCHHHHCCCEEEEEEEEEEEEEECCCEEEEEEEEC
T ss_conf 110---------003899980340899922541065579099999999851570788099999723