HHsearch results for GI: 254781210 and protein with PDBid: 1ohg_A

>1ohg_A Major capsid protein; virus, virus coat protein, virus/viral protein, auto- catalytic cross-LINK, icosahedral virus; 3.45A {Bacteriophage HK97} SCOP: d.183.1.1 PDB: 2frp_A 2fsy_A 2ft1_A 2fte_A 3ddx_A 2gp1_A 2fs3_A 3e8k_A 1if0_A
Probab=98.98  E-value=1.3e-07  Score=60.75  Aligned_cols=247  Identities=10%  Similarity=0.023  Sum_probs=142.9

Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCC--EEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2430100230312674068713462--35533258987432456876269998234431122126888874100689999
Q gi|254781210|r   28 SKLRPTVTEQATEGEASALVEVFKP--TEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYA  105 (343)
Q Consensus        28 s~L~~~V~~~t~~~Gks~~f~~~G~--~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~~IddiDe~k~~~d~rs~y~  105 (343)
                      +.+|++++..+.. +.+..+|+...  ..|....++ +..+..+...+.+......+..-..|.+.- ++--.+..+...
T Consensus        29 ~~vr~~~~~~~~~-~~~~~~~~~t~~~~~a~~v~Eg-~~~~~~~~~f~~v~~~~~k~~~~~~is~el-l~ds~~l~~~v~  105 (282)
T 1ohg_A           29 LTIRDLLAQGRTS-SNALEYVREEVFTNNADVVAEK-ALKPESDITFSKQTANVKTIAHWVQASRQV-MDDAPMLQSYIN  105 (282)
T ss_dssp             CCSGGGSEEEECC-SSEEEEEEEEEEECCCEEECTT-CCCCBCEEEEEEEEEECEEEEEEEEEEHHH-HHHSTTHHHHHH
T ss_pred             HHHHHHHCEEEEC-CCCEEEEEEECCCCCEEEECCC-CCCCCCCCCEEEEEEEEEEEEEEECCCHHH-HHHHHHHHHHHH
T ss_conf             4478660626636-9868988884465741786478-877767553146886439999997389899-744899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             99999987768899999862014556666654456666402302357764222899999999860238897546079976
Q gi|254781210|r  106 SLATAAMHRKQDEAILKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQVYVLI  185 (343)
Q Consensus       106 ~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~lt~akl~~a~~~ld~~~Vp~~g~~~~~v~  185 (343)
                      ++++++++++.|+.++.   |.......+    ...................+.+.+..++..++.++.+..   .| ++
T Consensus       106 ~~l~~~~~~~~d~a~l~---G~G~~~~~~----g~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~---~~-vm  174 (282)
T 1ohg_A          106 NRLMYGLALKEEGQLLN---GDGTGDNLE----GLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSAS---GI-VL  174 (282)
T ss_dssp             HHHHHHHHHHHHHHHHS---CCCSTTSCC----CHHHHCEECCGGGCCTTCCHHHHHHHHHHHTGGGTSCCC---EE-EE
T ss_pred             HHHHHHHHHHHHHHHHC---CCCCCCCCC----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC---EE-EE
T ss_conf             99999999986356310---668887656----421113332111223345314568999987775356676---59-99


Q ss_pred             CHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999875067101000001343113670122743589970777876666544433333456556677766666666545
Q gi|254781210|r  186 PSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTVKSSAKFE  265 (343)
Q Consensus       186 ~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (343)
                      +|..|..|.....-.. .|.- .....+.-++++|++++.++.+|.....                             -
T Consensus       175 n~~~~~~l~~lkd~~G-~~~~-~~~~~~~~~~l~G~Pv~~s~~v~~~~~~-----------------------------~  223 (282)
T 1ohg_A          175 NPRDWHNIALLKDNEG-RYIF-GGPQAFTSNIMWGLPVVPTKAQAAGTFT-----------------------------V  223 (282)
T ss_dssp             CHHHHHHHHTCBCTTS-CBTT-TTTTSCCCSEETTEEEEECTTSCTTEEE-----------------------------E
T ss_pred             ECCHHHHHHHEECCCC-CEEE-CCCCCCCCCCCCCEEEEEECCCCCCCEE-----------------------------E
T ss_conf             3143444641036788-6530-3544467771066269972788766147-----------------------------6


Q ss_pred             CCCCCEEEEEEECCCCEEEEECCCEEEEEECCCC-C--CHHEEEHEECCCCEEECCCCEEEEEECH
Q ss_conf             5655137999845410344513531565541653-2--0330001000263565415258999541
Q gi|254781210|r  266 DTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGK-W--HAPQITLTSSFGATRIEPDKILGIEISK  328 (343)
Q Consensus       266 ~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~k-~--~a~~i~~~~s~Ga~~l~~~~vv~I~~~e  328 (343)
                      +++         +.+..+....++.+++.+.... +  .-..+.+.+-+|....+|+++|.++.+-
T Consensus       224 gdf---------~~~~~~~~r~~~~v~~~~~~~~~f~~~~v~~ra~~r~~~~v~~p~A~v~~~~~~  280 (282)
T 1ohg_A          224 GGF---------DMASQVWDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTFSS  280 (282)
T ss_dssp             ECH---------HHHEEEEESEEEEEEEESSSTTCTTTTEEEEEEEEEECEEESCGGGEEEEECCC
T ss_pred             ECC---------CCEEEEEECCCCEEEEECCCCHHHHCCCEEEEEEEEEEEEEECCCEEEEEEEEC
T ss_conf             110---------003899980340899922541065579099999999851570788099999723