HHSEARCH alignment of GI: 254781210 and SCOP domain: d2ft1a1

Alignment
>d2ft1a1 d.183.1.1 (A:104-383) Major capsid protein gp5 {Bacteriophage HK97 [TaxId: 37554]}
Probab=98.89  E-value=2.1e-07  Score=58.17  Aligned_cols=245  Identities=11%  Similarity=0.014  Sum_probs=143.2

Q ss_pred             HHHHHCCEECCCCCCCEEEEECCCC--EEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2430100230312674068713462--35533258987432456876269998234431122126888874100689999
Q gi|254781210|r   28 SKLRPTVTEQATEGEASALVEVFKP--TEAHEIVGDMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYA  105 (343)
Q Consensus        28 s~L~~~V~~~t~~~Gks~~f~~~G~--~~A~~~t~r~~~t~~~~~~~~~~~v~~~~~~~a~~IddiDe~k~~~d~rs~y~  105 (343)
                      +.+|++++..+.. +.+..+|+...  ..|....++ +..|..+...+.+.....-+..-..|.+.-. +-..+..+...
T Consensus        29 ~~vr~~~~~~~~~-~~~~~~~~~~~~~~~a~~v~Eg-~~~~~~~~~f~~v~~~~~k~~~~~~iS~ell-~ds~~~~~~v~  105 (280)
T d2ft1a1          29 LTIRDLLAQGRTS-SNALEYVREEVFTNNADVVAEK-ALKPESDITFSKQTANVKTIAHWVQASRQVM-DDAPMLQSYIN  105 (280)
T ss_dssp             CCSGGGSEEEECC-SSEEEEEEEEEEECCCEEECTT-CCCCBCEEEEEEEEEECEEEEEEEEEEHHHH-HHSTTHHHHHH
T ss_pred             HHHHHHHCEEEEC-CCCEEEEEEECCCCCEEEECCC-CCCCCCCCCCCCCCCCCEEEEEEECCCHHHH-HHHHHHHHHHH
T ss_conf             4478660537727-9978988885476866896268-8777565443434344589999953699998-41178999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             99999987768899999862014556666654456666402302357764222899999999860238897546079976
Q gi|254781210|r  106 SLATAAMHRKQDEAILKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQVYVLI  185 (343)
Q Consensus       106 ~~~g~ALar~~D~~I~~a~~g~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~lt~akl~~a~~~ld~~~Vp~~g~~~~~v~  185 (343)
                      +.++.+++++.|+.++.   |.......    ....................+.+.++.+...++.++.+..   .|+ +
T Consensus       106 ~~l~~~~a~~~d~a~l~---G~g~~~~~----~gl~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~~-~  174 (280)
T d2ft1a1         106 NRLMYGLALKEEGQLLN---GDGTGDNL----EGLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSAS---GIV-L  174 (280)
T ss_dssp             HHHHHHHHHHHHHHHHS---CCSSTTSC----CCHHHHSEECCGGGCCSSCCHHHHHHHHHHHHHTTSCCCC---EEE-E
T ss_pred             HHHHHHHHHHHHHHHHC---CCCCCCCC----CCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC---EEE-E
T ss_conf             99999999986566530---55667776----6521014444322344654321458999987765135575---279-7


Q ss_pred             CHHHHHHHHCCCCEEEHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999875067101000001343113670122743589970777876666544433333456556677766666666545
Q gi|254781210|r  186 PSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTKFPGLIDGKVEYPNGKPTVKSSAKFE  265 (343)
Q Consensus       186 ~p~~~~~Ll~~t~~~s~Df~~~~al~~G~I~~~~G~~~i~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (343)
                      +|..|..|.....-.. .|.- .....|.-++++|++++.++.+|.....                             -
T Consensus       175 ~~~~~~~l~~lkd~~G-~~l~-~~~~~~~~~~l~G~Pv~~s~~~~~~~~~-----------------------------~  223 (280)
T d2ft1a1         175 NPRDWHNIALLKDNEG-RYIF-GGPQAFTSNIMWGLPVVPTKAQAAGTFT-----------------------------V  223 (280)
T ss_dssp             CHHHHHHHHTCBCTTS-CBSS-STTTCCCCSEETTEEEEECTTSCTTEEE-----------------------------E
T ss_pred             CHHHHHHHHHCCCCCC-CEEC-CCCCCCCCCCCCCEEEEEECCCCCCEEE-----------------------------E
T ss_conf             2768877761116788-6502-5644577750477479972798752489-----------------------------9


Q ss_pred             CCCCCEEEEEEECCCCEEEEECCCEEEEEECCC-C--CCHHEEEHEECCCCEEECCCCEEEEEE
Q ss_conf             565513799984541034451353156554165-3--203300010002635654152589995
Q gi|254781210|r  266 DTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPG-K--WHAPQITLTSSFGATRIEPDKILGIEI  326 (343)
Q Consensus       266 ~~~~~~~~~~~hksAvg~a~~~di~~ei~~~~~-k--~~a~~i~~~~s~Ga~~l~~~~vv~I~~  326 (343)
                      +++         +.+..+....++.+++.+.+. .  +.-..+.+.+-+|....+|+++|....
T Consensus       224 gdf---------~~~~~~~~r~~~~v~~~~~~~~~f~~~~v~~ra~~r~~~~v~~~~Afv~g~~  278 (280)
T d2ft1a1         224 GGF---------DMASQVWDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTF  278 (280)
T ss_dssp             ECH---------HHHEEEEESEEEEEEEESSSTTHHHHTEEEEEEEEEECEEESCGGGEEEEEC
T ss_pred             EEH---------HHEEEEEEECCCEEEEEECCCCHHHCCEEEEEEEEEEEEEEECCCEEEEEEE
T ss_conf             603---------7728999913518998414511644790999999998558807881999996


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Major capsid protein gp5
superfamily: Major capsid protein gp5
family: Major capsid protein gp5
domain: Major capsid protein gp5
species: Bacteriophage HK97 [TaxId: 37554]