RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781210|ref|YP_003065623.1| hypothetical protein
CLIBASIA_05585 [Candidatus Liberibacter asiaticus str. psy62]
         (343 letters)



>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase
           {Lingulodinium polyedrum [TaxId: 160621]}
          Length = 351

 Score = 26.4 bits (58), Expect = 3.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 118 EAILKGMLGVNKKGKIGAETE 138
           EAI  GMLG  +  KI A+T+
Sbjct: 176 EAIKSGMLGAAEANKIVADTD 196


>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 147

 Score = 25.2 bits (55), Expect = 7.4
 Identities = 7/34 (20%), Positives = 19/34 (55%)

Query: 125 LGVNKKGKIGAETEFFSKENILSAVEGDDFFKTF 158
           + +NKKGK+ A++    K+ + + +  ++ +   
Sbjct: 75  ICMNKKGKLIAKSNGKGKDCVFTEIVLENNYTAL 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,240,363
Number of extensions: 56753
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 4
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)