BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781210|ref|YP_003065623.1| hypothetical protein CLIBASIA_05585 [Candidatus Liberibacter asiaticus str. psy62] (343 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781210|ref|YP_003065623.1| hypothetical protein CLIBASIA_05585 [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/343 (100%), Positives = 343/343 (100%) Query: 1 MATKEQLATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVG 60 MATKEQLATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVG Sbjct: 1 MATKEQLATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVG 60 Query: 61 DMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYASLATAAMHRKQDEAI 120 DMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYASLATAAMHRKQDEAI Sbjct: 61 DMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYASLATAAMHRKQDEAI 120 Query: 121 LKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQ 180 LKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQ Sbjct: 121 LKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQ 180 Query: 181 VYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTK 240 VYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTK Sbjct: 181 VYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTK 240 Query: 241 FPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKW 300 FPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKW Sbjct: 241 FPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKW 300 Query: 301 HAPQITLTSSFGATRIEPDKILGIEISKDSLKGVPVLKGTKAA 343 HAPQITLTSSFGATRIEPDKILGIEISKDSLKGVPVLKGTKAA Sbjct: 301 HAPQITLTSSFGATRIEPDKILGIEISKDSLKGVPVLKGTKAA 343 >gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 20/42 (47%) Query: 89 DPFATLDSGINPLLPYASLATAAMHRKQDEAILKGMLGVNKK 130 DP +LD GI+ L Y ++A + + +G N+K Sbjct: 191 DPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQK 232 >gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 342 Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Query: 260 SSAKFED-TKIKYVLPIYCKSAVVFTQRKAIDV 291 SSA F+D +KI+Y LP+ K + Q K ID+ Sbjct: 68 SSAIFDDPSKIQY-LPLNAKERFLALQSKQIDI 99 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.133 0.384 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 208,779 Number of Sequences: 1233 Number of extensions: 8439 Number of successful extensions: 16 Number of sequences better than 100.0: 3 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 3 length of query: 343 length of database: 328,796 effective HSP length: 75 effective length of query: 268 effective length of database: 236,321 effective search space: 63334028 effective search space used: 63334028 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 39 (19.6 bits)