BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781210|ref|YP_003065623.1| hypothetical protein
CLIBASIA_05585 [Candidatus Liberibacter asiaticus str. psy62]
         (343 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781210|ref|YP_003065623.1| hypothetical protein CLIBASIA_05585 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 343

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/343 (100%), Positives = 343/343 (100%)

Query: 1   MATKEQLATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVG 60
           MATKEQLATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVG
Sbjct: 1   MATKEQLATANIYEFKKHVELALQETKSKLRPTVTEQATEGEASALVEVFKPTEAHEIVG 60

Query: 61  DMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYASLATAAMHRKQDEAI 120
           DMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYASLATAAMHRKQDEAI
Sbjct: 61  DMPDTIYNATDQDRRWVGHSQFGWAERIDPFATLDSGINPLLPYASLATAAMHRKQDEAI 120

Query: 121 LKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQ 180
           LKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQ
Sbjct: 121 LKGMLGVNKKGKIGAETEFFSKENILSAVEGDDFFKTFIGQLITAKSIFRKRYIDVDSEQ 180

Query: 181 VYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTK 240
           VYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTK
Sbjct: 181 VYVLIPSDVWASLFALERATSKDYINTAALQAGKIEAFAGVWFINMEKVPGNDLFPAGTK 240

Query: 241 FPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKW 300
           FPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKW
Sbjct: 241 FPGLIDGKVEYPNGKPTVKSSAKFEDTKIKYVLPIYCKSAVVFTQRKAIDVQHSKDPGKW 300

Query: 301 HAPQITLTSSFGATRIEPDKILGIEISKDSLKGVPVLKGTKAA 343
           HAPQITLTSSFGATRIEPDKILGIEISKDSLKGVPVLKGTKAA
Sbjct: 301 HAPQITLTSSFGATRIEPDKILGIEISKDSLKGVPVLKGTKAA 343


>gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 264

 Score = 25.8 bits (55), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 89  DPFATLDSGINPLLPYASLATAAMHRKQDEAILKGMLGVNKK 130
           DP  +LD GI+ L  Y ++A         + +    +G N+K
Sbjct: 191 DPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQK 232


>gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 342

 Score = 23.9 bits (50), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 260 SSAKFED-TKIKYVLPIYCKSAVVFTQRKAIDV 291
           SSA F+D +KI+Y LP+  K   +  Q K ID+
Sbjct: 68  SSAIFDDPSKIQY-LPLNAKERFLALQSKQIDI 99


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.133    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,779
Number of Sequences: 1233
Number of extensions: 8439
Number of successful extensions: 16
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 343
length of database: 328,796
effective HSP length: 75
effective length of query: 268
effective length of database: 236,321
effective search space: 63334028
effective search space used: 63334028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)