Query         gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 234
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 23:01:10 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781211.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1mqs_A SLY1 protein, SLY1P; S  60.2     3.2 9.4E-05   21.9   0.9   32   65-96     14-45  (79)
  2 >3iru_A Phoshonoacetaldehyde h  48.9       8 0.00024   19.3   1.4   66   71-143     1-69  (86)
  3 >1lva_A Selenocysteine-specifi  31.1      26 0.00078   15.9   1.8   17  113-129    27-43  (60)
  4 >2v9v_A Selenocysteine-specifi  30.6      26 0.00077   16.0   1.7   16  113-128    27-42  (60)
  5 >1swv_A Phosphonoacetaldehyde   28.8      23 0.00068   16.3   1.2   65   72-143     1-68  (84)
  6 >3bi8_A Dihydrodipicolinate sy  28.3      36  0.0011   15.0   2.1   43   84-126    13-62  (291)
  7 >3d2f_A Heat shock protein hom  25.9      45  0.0013   14.4   2.3   39   54-92     30-70  (220)
  8 >3h8m_A Ephrin type-A receptor  25.2      23 0.00068   16.3   0.6   62   43-104     2-65  (90)
  9 >2dl0_A SAM and SH3 domain-con  22.5      44  0.0013   14.5   1.6   40   53-92      9-49  (97)
 10 >2e8v_A Geranylgeranyl pyropho  19.1      61  0.0018   13.6   2.0   99   81-179     1-113 (146)

No 1  
>>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} (A:449-527)
Probab=60.24  E-value=3.2  Score=21.88  Aligned_cols=32  Identities=19%  Similarity=0.140  Sum_probs=27.0

Q ss_pred             CEECCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             20038002014567898999886281578999
Q gi|254781211|r   65 YTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQ   96 (234)
Q Consensus        65 ytlscpdyvseaevtahieafkeagvdarvaq   96 (234)
                      |-|+-++-+|++|+...-+|++++|+|-.--+
T Consensus        14 ~yLst~~~ls~~e~~~~e~aL~~~g~D~sal~   45 (79)
T 1mqs_A           14 LYLTSTTGLPKDFVQNVENYFKENDYDINALK   45 (79)
T ss_dssp             HHHHCSSCCCHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             99862789866899999999986499868999


No 2  
>>3iru_A Phoshonoacetaldehyde hydolase like protein; phosphonoacetaldehyde hydrolase like protein, structural genomics, PSI-2; 2.30A {Oleispira antarctica} (A:27-112)
Probab=48.87  E-value=8  Score=19.29  Aligned_cols=66  Identities=26%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             020145678989998862815789999999---9998368877883113699999998650773023477999997
Q gi|254781211|r   71 DYVSEAEVTAHIEAFKEAGVDARVAQKVVD---KLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETREKDIARYF  143 (234)
Q Consensus        71 dyvseaevtahieafkeagvdarvaqkvvd---klvdhgrkigeqfgasleeerkllqtklgsdyetrekdiaryf  143 (234)
                      ||-|-|-|.+-+|+|++.||+.-.++--..   --.||=|.+.+     ++.-+...+.+.|....  |.||-+.|
T Consensus         1 DfG~fAPv~aF~eaF~~~Gi~iT~~EaR~PMGl~K~dHIrall~-----~p~V~~~W~~~~g~~~~--e~DV~~iy   69 (86)
T 3iru_A            1 DFGSLAPVYAFXELFKQEGIEVTQAEAREPXGTEKSEHIRRXLG-----NSRIANAWLSIKGQASN--EEDIKRLY   69 (86)
T ss_dssp             STTCCHHHHHHHHHHHTTTCCCCHHHHHTTTTSCHHHHHHHHTT-----SHHHHHHHHHHHSSCCC--HHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHC-----CCHHHHHHHHHHHCCCC--HHHHHHHH
T ss_conf             28740699999999998699999999998848879999999852-----44036799997620266--99999999


No 3  
>>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} (A:1-60)
Probab=31.13  E-value=26  Score=15.92  Aligned_cols=17  Identities=53%  Similarity=0.581  Sum_probs=13.4

Q ss_pred             HCCCHHHHHHHHHHHHC
Q ss_conf             31136999999986507
Q gi|254781211|r  113 FGASLEEERKLLQTKLG  129 (234)
Q Consensus       113 fgasleeerkllqtklg  129 (234)
                      -..||||.|||||....
T Consensus        27 aslsleetrkllqs~aa   43 (60)
T 1lva_A           27 ASLSLEETRKLLQSXAA   43 (60)
T ss_dssp             HTCCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
T ss_conf             49999999999999884


No 4  
>>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} (A:1-60)
Probab=30.64  E-value=26  Score=15.97  Aligned_cols=16  Identities=56%  Similarity=0.578  Sum_probs=12.9

Q ss_pred             HCCCHHHHHHHHHHHH
Q ss_conf             3113699999998650
Q gi|254781211|r  113 FGASLEEERKLLQTKL  128 (234)
Q Consensus       113 fgasleeerkllqtkl  128 (234)
                      -..||||.|||||.-.
T Consensus        27 aslsleetrkllqsma   42 (60)
T 2v9v_A           27 ASLSLEETRKLLQSMA   42 (60)
T ss_dssp             HTCCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHH
T ss_conf             4949999999999998


No 5  
>>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} (A:20-103)
Probab=28.77  E-value=23  Score=16.29  Aligned_cols=65  Identities=20%  Similarity=0.234  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             20145678989998862815789999999---9998368877883113699999998650773023477999997
Q gi|254781211|r   72 YVSEAEVTAHIEAFKEAGVDARVAQKVVD---KLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETREKDIARYF  143 (234)
Q Consensus        72 yvseaevtahieafkeagvdarvaqkvvd---klvdhgrkigeqfgasleeerkllqtklgsdyetrekdiaryf  143 (234)
                      |-|-|-|.+-+|+|++.||+.-+++--..   --.||=|.+.+     ++.-+...+.+.|....  |.||-+.|
T Consensus         1 fG~fAPv~aFveaF~~~Gi~iT~~EaR~PMGl~K~dHIrall~-----~p~V~~~W~~~~g~~~t--e~DV~~iy   68 (84)
T 1swv_A            1 YGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTE-----MPRIASEWNRVFRQLPT--EADIQEMY   68 (84)
T ss_dssp             TTCCTTHHHHHHHHHTTTCCCCHHHHHTTTTSCHHHHHHHHHH-----SHHHHHHHHHHHSSCCC--HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH-----HHHHHHHHHHHHCCCCC--HHHHHHHH
T ss_conf             8741699999999998699999999998848778999999862-----02446899998564676--88899999


No 6  
>>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* (A:)
Probab=28.31  E-value=36  Score=15.04  Aligned_cols=43  Identities=16%  Similarity=0.288  Sum_probs=22.9

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHH-------HHHHHCCCHHHHHHHHHH
Q ss_conf             9886281578999999999983688-------778831136999999986
Q gi|254781211|r   84 AFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT  126 (234)
Q Consensus        84 afkeagvdarvaqkvvdklvdhgrk-------igeqfgasleeerkllqt  126 (234)
                      .|.+.++|-....+.++.++++|-.       .||.+.-|.+|-+.++..
T Consensus        13 Pf~~d~iD~~~~~~~i~~l~~~Gv~gi~~~g~tGE~~~Ls~~Er~~l~~~   62 (291)
T 3bi8_A           13 PFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKF   62 (291)
T ss_dssp             CBCSSSBCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHH
T ss_conf             86879809999999999999779999998910547203899999999999


No 7  
>>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, acetylation, ATP-binding, calmodulin-binding, chaperone, cytoplasm; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* (A:1-38,A:137-233,A:315-399)
Probab=25.89  E-value=45  Score=14.42  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=32.4

Q ss_pred             HCCCCCC--CCCCCEECCCHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             1189999--83212003800201456789899988628157
Q gi|254781211|r   54 EAGEPKP--PIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDA   92 (234)
Q Consensus        54 eagepkp--piedytlscpdyvseaevtahieafkeagvda   92 (234)
                      +.|+-.-  ||.+-.+++|-|.++++-.|-.+|.+.||...
T Consensus        30 ~~~~~~~p~~v~~~vitVP~~~t~~qr~a~~~aa~~AG~~~   70 (220)
T 3d2f_A           30 EVSNRSTPSNITDVCIAVPPWYTEEQRYNIADAARIAGLNP   70 (220)
T ss_dssp             TTSCSSEECCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCCEECECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf             99990316798759999879899899999999999779980


No 8  
>>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens} (A:)
Probab=25.18  E-value=23  Score=16.29  Aligned_cols=62  Identities=16%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             CCCCCCCCCHHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHH-H-HHHHHHHHHHH
Q ss_conf             88775544302118999983212003800201456789899988628157-8-99999999998
Q gi|254781211|r   43 RNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDA-R-VAQKVVDKLVD  104 (234)
Q Consensus        43 rnpssssssteeagepkppiedytlscpdyvseaevtahieafkeagvda-r-vaqkvvdklvd  104 (234)
                      |+|.+++......-.++|+-.--.-.+.++......-.+++.|.+.|+|. . ++.--.+.|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~w~~~~V~~WL~~~gl~~Y~~~F~~~~i~g~~~L~~l~~~dL~~   65 (90)
T 3h8m_A            2 HHHHHHSSGRENLYFQGTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMS   65 (90)
T ss_dssp             -----------------CCCCCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHH
T ss_conf             7544578898886547999998626299999888589999999984887299997788999978


No 9  
>>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=22.48  E-value=44  Score=14.49  Aligned_cols=40  Identities=13%  Similarity=0.179  Sum_probs=27.0

Q ss_pred             HHCCCCCCCCCCCEE-CCCHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             211899998321200-3800201456789899988628157
Q gi|254781211|r   53 EEAGEPKPPIEDYTL-SCPDYVSEAEVTAHIEAFKEAGVDA   92 (234)
Q Consensus        53 eeagepkppiedytl-scpdyvseaevtahieafkeagvda   92 (234)
                      ........|+..++. .+.+++........++.|++.++|.
T Consensus         9 ~~~~~~~~~~~~w~~~~V~~WL~~~~l~~y~~~F~~~~i~g   49 (97)
T 2dl0_A            9 GLTEICRKPVSPGCISSVSDWLISIGLPMYAGTLSTAGFST   49 (97)
T ss_dssp             CCCSCCCCCCCCSCCCSHHHHHHHHTCGGGHHHHHHHTCCS
T ss_pred             CCHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCH
T ss_conf             73133039999563879999999887966999999938641


No 10 
>>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... (A:195-340)
Probab=19.11  E-value=61  Score=13.55  Aligned_cols=99  Identities=12%  Similarity=0.115  Sum_probs=59.0

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHCCCH---HHHH---HHHHHHHHHHCCCHH
Q ss_conf             8999886281578999999999983---688778831136999999986507730---2347---799999753038814
Q gi|254781211|r   81 HIEAFKEAGVDARVAQKVVDKLVDH---GRKIGEQFGASLEEERKLLQTKLGSDY---ETRE---KDIARYFRKEKIPDN  151 (234)
Q Consensus        81 hieafkeagvdarvaqkvvdklvdh---grkigeqfgasleeerkllqtklgsdy---etre---kdiaryfrkekipdn  151 (234)
                      ||+++..-|-..-+|-.+.|-+.|-   ....|..+|.-|.+-..-+-.-++-..   +.++   .-+..+..+......
T Consensus         1 ~i~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (146)
T 2e8v_A            1 HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKD   80 (146)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHH
T ss_conf             25888888752015787501000001446641356553676285539999999964652166999999999745799989


Q ss_pred             HHHHHHH-----HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             7999998-----632256777999987511211
Q gi|254781211|r  152 DVQSLIS-----AWGFEKTFNFFDRYAQQNKES  179 (234)
Q Consensus       152 dvqslis-----awgfektfnffdryaqqnkes  179 (234)
                      ++..++.     .-+++++.+....|.++-.+.
T Consensus        81 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~a~~~  113 (146)
T 2e8v_A           81 IKLKLIQILEFDTNSLAYTKNFINQLVNMIKND  113 (146)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999986259999999999999870447


Done!