Query gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 234
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:49:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781211.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fgh_A Transcription factor A, 37.3 16 0.00068 16.3 2.3 64 56-140 1-64 (67)
2 1v63_A Nucleolar transcription 27.0 30 0.0013 14.5 3.1 74 52-144 3-76 (101)
3 2k0d_X IMME7, colicin-E7 immun 21.8 38 0.0016 13.9 3.3 47 56-112 8-54 (101)
4 1unk_A Colicin E7; immunity pr 20.3 40 0.0017 13.7 2.9 45 58-112 3-47 (87)
5 3keo_A Redox-sensing transcrip 19.5 35 0.0015 14.1 1.4 15 92-106 158-172 (212)
6 1fr2_A Colicin E9 immunity pro 16.6 49 0.0021 13.2 4.1 44 58-112 3-46 (86)
7 1f6v_A DNA transposition prote 16.1 9.7 0.00041 17.7 -2.1 24 141-164 6-29 (91)
8 2cpy_A RNA-binding protein 12; 14.3 12 0.00049 17.2 -2.1 69 129-216 22-90 (114)
9 3h1q_A Ethanolamine utilizatio 10.7 72 0.003 12.1 1.2 32 60-91 90-121 (272)
10 2kng_A Protein LSR2; DNA-bindi 10.6 73 0.003 12.1 1.6 18 213-230 9-26 (55)
No 1
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=37.35 E-value=16 Score=16.29 Aligned_cols=64 Identities=16% Similarity=0.294 Sum_probs=40.8
Q ss_pred CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 89999832120038002014567898999886281578999999999983688778831136999999986507730234
Q gi|254781211|r 56 GEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETR 135 (234)
Q Consensus 56 gepkppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeqfgasleeerkllqtklgsdyetr 135 (234)
|.||.|.--|.+-|-+.. +.++....+ +-.+.||+.+-.--++|+.......-.+.+.-
T Consensus 1 GkPKrP~say~~F~~~~r---------~~~~~~~p~------------e~~k~~~~~W~~ls~~eK~~y~~~a~~~~~~Y 59 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERF---------QEAKGDSPQ------------EKLKTVKENWKNLSDSEKELYIQHAKEDETRY 59 (67)
T ss_dssp CCCCCCCCHHHHHHHHHH---------HHHCSSSHH------------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH---------HHHHHCCHH------------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 968799989999999999---------999850999------------99999999882099999999999999999999
Q ss_pred HHHHH
Q ss_conf 77999
Q gi|254781211|r 136 EKDIA 140 (234)
Q Consensus 136 ekdia 140 (234)
+.+++
T Consensus 60 ~~e~~ 64 (67)
T 3fgh_A 60 HNEMK 64 (67)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99987
No 2
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=27.01 E-value=30 Score=14.55 Aligned_cols=74 Identities=12% Similarity=0.263 Sum_probs=51.3
Q ss_pred HHHCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 02118999983212003800201456789899988628157899999999998368877883113699999998650773
Q gi|254781211|r 52 TEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSD 131 (234)
Q Consensus 52 teeagepkppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeqfgasleeerkllqtklgsd 131 (234)
+-..|-||+|.--|.|-|-++.... +..+.+ ..+-.+.||+.+-.--++|+.-......-+
T Consensus 3 ~~~~~p~KrP~~ay~lF~~e~r~~~---------~~~~~~----------~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~ 63 (101)
T 1v63_A 3 SGSSGPKKPPMNGYQKFSQELLSNG---------ELNHLP----------LKERMVEIGSRWQRISQSQKEHYKKLAEEQ 63 (101)
T ss_dssp CCCCSSCCCCSSSHHHHHHHHHHHC---------TTTTSC----------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH---------HCCCCC----------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999989899989999999999987---------558989----------999999999998509999999999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0234779999975
Q gi|254781211|r 132 YETREKDIARYFR 144 (234)
Q Consensus 132 yetrekdiaryfr 144 (234)
-+..+..+..|-.
T Consensus 64 k~~y~~e~~~y~~ 76 (101)
T 1v63_A 64 QRQYKVHLDLWVK 76 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999985
No 3
>2k0d_X IMME7, colicin-E7 immunity protein; toxin inhibitor; NMR {Escherichia coli}
Probab=21.82 E-value=38 Score=13.92 Aligned_cols=47 Identities=36% Similarity=0.489 Sum_probs=31.8
Q ss_pred CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899998321200380020145678989998862815789999999999836887788
Q gi|254781211|r 56 GEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQ 112 (234)
Q Consensus 56 gepkppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeq 112 (234)
-+-|--|+||| |+|...-+..|-.+... ...+..|.|++|=.+|-|.
T Consensus 8 ~elK~~isDYT--------E~EFl~fl~~i~~~~~~--~~e~~~d~L~~hF~~iteH 54 (101)
T 2k0d_X 8 HELKNSISDYT--------EAEFVQLLKEIEKENVA--ATDDVLDVLLEHFVKITEH 54 (101)
T ss_dssp -CCCSSGGGCB--------HHHHHHHHHHHHHHHHH--TCSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCC--------HHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHCC
T ss_conf 99986775518--------99999999999864677--5089999999999999708
No 4
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=20.32 E-value=40 Score=13.72 Aligned_cols=45 Identities=36% Similarity=0.494 Sum_probs=29.0
Q ss_pred CCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998321200380020145678989998862815789999999999836887788
Q gi|254781211|r 58 PKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQ 112 (234)
Q Consensus 58 pkppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeq 112 (234)
-|--|+||| |+|...-+..|-++... -..+..|.|++|=.+|-|.
T Consensus 3 lK~~isDYT--------E~EFl~fl~~i~~~~~~--~~e~~~d~l~~hF~~iteH 47 (87)
T 1unk_A 3 LKNSISDYT--------EAEFVQLLKEIEKENVA--ATDDVLDVLLEHFVKITEH 47 (87)
T ss_dssp CCCSGGGSC--------HHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCC--------HHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCC
T ss_conf 330126379--------99999999999974787--6188999999999997049
No 5
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=19.51 E-value=35 Score=14.14 Aligned_cols=15 Identities=47% Similarity=0.558 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 789999999999836
Q gi|254781211|r 92 ARVAQKVVDKLVDHG 106 (234)
Q Consensus 92 arvaqkvvdklvdhg 106 (234)
+..||.|.|.||+.|
T Consensus 158 ~~~AQ~vad~Lv~~G 172 (212)
T 3keo_A 158 STEAQEVADILVKAG 172 (212)
T ss_dssp GGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 789999999999829
No 6
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=16.57 E-value=49 Score=13.17 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=31.1
Q ss_pred CCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998321200380020145678989998862815789999999999836887788
Q gi|254781211|r 58 PKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQ 112 (234)
Q Consensus 58 pkppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeq 112 (234)
-|--|+||| |+|...-+..|-++.... ....|.||+|=.+|-|.
T Consensus 3 lK~~i~DYT--------E~EFl~fl~~i~~~~~~~---e~~~~~lv~hF~~iteH 46 (86)
T 1fr2_A 3 LKHSISDYT--------EAEFLQLVTTICNADTSS---EEELVKLVTHFAEMTEH 46 (86)
T ss_dssp CCSCGGGSB--------HHHHHHHHHHHHTTCSSS---HHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCC--------HHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHCCC
T ss_conf 221015379--------999999999999668987---99999999999997259
No 7
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=16.12 E-value=9.7 Score=17.75 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=17.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 997530388147999998632256
Q gi|254781211|r 141 RYFRKEKIPDNDVQSLISAWGFEK 164 (234)
Q Consensus 141 ryfrkekipdndvqslisawgfek 164 (234)
+-.+..|--.+||++++.|||.+-
T Consensus 6 kr~~i~k~kk~Di~Ai~~AWgv~d 29 (91)
T 1f6v_A 6 KRTAINKTKKADVKAIADAWQING 29 (91)
T ss_dssp CTTCCSSCSGGGTTHHHHSSTTSS
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCC
T ss_conf 113015898899999999918998
No 8
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=14.29 E-value=12 Score=17.22 Aligned_cols=69 Identities=14% Similarity=0.287 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 77302347799999753038814799999863225677799998751121123310221245214432288862784300
Q gi|254781211|r 129 GSDYETREKDIARYFRKEKIPDNDVQSLISAWGFEKTFNFFDRYAQQNKESSTGDTFVRSEGSQEADRDFDKVFNTPDFG 208 (234)
Q Consensus 129 gsdyetrekdiaryfrkekipdndvqslisawgfektfnffdryaqqnkesstgdtfvrsegsqeadrdfdkvfntpdfg 208 (234)
+-.|.+.+.||..+|..-.+..+.|.-+. + ..-.++|.-||.-+-..+|.+-.. .|...|+
T Consensus 22 nLp~~~t~~di~~~F~~~g~~~~~v~~~~------------~-----~~g~~~G~afV~F~~~e~a~~Al~--~n~~~i~ 82 (114)
T 2cpy_A 22 NIPFSITKMDVLQFLEGIPVDENAVHVLV------------D-----NNGQGLGQALVQFKNEDDARKSER--LHRKKLN 82 (114)
T ss_dssp SCCTTSCHHHHHHHTTTSCCCSTTEEECC------------C-----TTSSCSSCEEEECSSHHHHHHHGG--GCSEEET
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEEE------------C-----CCCCEEEEEEEEECCHHHHHHHHH--CCCCCCC
T ss_conf 99998989999999887198307899988------------9-----999870389999899999999985--3998299
Q ss_pred HHHHCCCH
Q ss_conf 33312646
Q gi|254781211|r 209 SRVLSGDK 216 (234)
Q Consensus 209 srvlsgdk 216 (234)
.|.+.-..
T Consensus 83 gr~i~v~~ 90 (114)
T 2cpy_A 83 GREAFVHV 90 (114)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
T ss_conf 99999999
No 9
>3h1q_A Ethanolamine utilization protein EUTJ; structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-2901}
Probab=10.73 E-value=72 Score=12.09 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=28.0
Q ss_pred CCCCCCEECCCHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 98321200380020145678989998862815
Q gi|254781211|r 60 PPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91 (234)
Q Consensus 60 ppiedytlscpdyvseaevtahieafkeagvd 91 (234)
.++.+-.+++|-|.++.+-.|-.+|.+.||.+
T Consensus 90 ~~i~~~vi~VP~~~t~~~r~ai~~aa~~AGl~ 121 (272)
T 3h1q_A 90 SELFQAATAIPPGTVGRNAEACGHVVAGAGLE 121 (272)
T ss_dssp SCCCEEEEECCSCC---CTTHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 98886899989989989999999999985997
No 10
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=10.63 E-value=73 Score=12.07 Aligned_cols=18 Identities=28% Similarity=0.726 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 264678899999986544
Q gi|254781211|r 213 SGDKEATKTLRQWAEKQA 230 (234)
Q Consensus 213 sgdkeatktlrqwaekqa 230 (234)
..|++-++.+|.||..+.
T Consensus 9 ~~dr~~~~~IR~WAr~~G 26 (55)
T 2kng_A 9 AIDREQSAAIREWARRNG 26 (55)
T ss_dssp CCSSTHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCC
T ss_conf 866353799999999938
Done!