Query gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 234 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:45:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781211.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1v64a_ a.21.1.1 (A:) Nucleola 36.3 12 0.00089 15.5 4.1 90 44-156 3-93 (108) 2 d2v9va1 a.4.5.35 (A:377-437) C 30.7 11 0.00076 16.0 1.7 16 113-128 27-42 (61) 3 d2pfxa1 a.152.1.3 (A:1-190) Un 28.5 16 0.0012 14.7 8.0 89 86-174 63-175 (190) 4 d1v63a_ a.21.1.1 (A:) Nucleola 23.5 20 0.0015 14.1 3.3 73 54-145 5-77 (101) 5 d1ayia_ a.28.2.1 (A:) ImmE7 pr 22.8 21 0.0015 14.0 2.9 45 58-112 3-47 (86) 6 d2hkua2 a.121.1.1 (A:88-208) P 16.6 28 0.0021 13.2 3.9 31 96-126 80-110 (121) 7 d1f6va_ a.49.1.1 (A:) C-termin 16.2 5.5 0.0004 17.8 -2.1 24 142-165 7-30 (91) 8 d2a5yb2 a.77.1.3 (B:1-108) Cel 15.5 30 0.0022 13.0 3.3 55 125-181 14-70 (108) 9 d1jcea1 c.55.1.1 (A:4-140) Pro 13.5 34 0.0025 12.6 2.2 36 56-91 86-121 (137) 10 g1avo.1 a.24.8.1 (A:,B:) Prote 12.8 35 0.0026 12.6 1.2 35 110-144 103-137 (200) No 1 >d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=36.25 E-value=12 Score=15.54 Aligned_cols=90 Identities=21% Similarity=0.411 Sum_probs=53.7 Q ss_pred CCCCCCCCHHHCCCC-CCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 877554430211899-9983212003800201456789899988628157899999999998368877883113699999 Q gi|254781211|r 44 NPSSSSSSTEEAGEP-KPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERK 122 (234) Q Consensus 44 npssssssteeagep-kppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeqfgasleeerk 122 (234) ..++......-.|.| |||.--|.|-|-|... .++... .-+..+.||+.+-.--++|+. T Consensus 3 ~~~~~~~k~~~~~~p~K~P~~ay~lF~~~~r~---------~~~~~~------------~~e~~k~ig~~W~~Ls~~eK~ 61 (108) T d1v64a_ 3 SGSSGQLKDKFDGRPTKPPPNSYSLYCAELMA---------NMKDVP------------STERMVLCSQQWKLLSQKEKD 61 (108) T ss_dssp CCSSCCSSCCTTTSCCCCCSSHHHHHHHHHHH---------HCTTSC------------HHHHHHHHHHHHHHSCHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---------HCCCCC------------HHHHHHHHHHHHCCCCHHHHH T ss_conf 99886556668999887999689999999998---------832788------------999999999988449999999 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 9986507730234779999975303881479999 Q gi|254781211|r 123 LLQTKLGSDYETREKDIARYFRKEKIPDNDVQSL 156 (234) Q Consensus 123 llqtklgsdyetrekdiaryfrkekipdndvqsl 156 (234) -.+..--.+-+.-..+++.|. +.+|..+-+.+ T Consensus 62 ~Y~~~a~~~k~~Y~~~~~~y~--~~~~~~~k~~~ 93 (108) T d1v64a_ 62 AYHKKCDQKKKDYEVELLRFL--ESLPEEEQQRV 93 (108) T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHH T ss_conf 999999999999999999998--53889899999 No 2 >d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} Probab=30.66 E-value=11 Score=15.97 Aligned_cols=16 Identities=56% Similarity=0.578 Sum_probs=12.9 Q ss_pred HCCCHHHHHHHHHHHH Q ss_conf 3113699999998650 Q gi|254781211|r 113 FGASLEEERKLLQTKL 128 (234) Q Consensus 113 fgasleeerkllqtkl 128 (234) -..||||.|||||.-. T Consensus 27 aslsleetrkllqsma 42 (61) T d2v9va1 27 ASLSLEETRKLLQSMA 42 (61) T ss_dssp HTCCHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHH T ss_conf 6234899999999998 No 3 >d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]} Probab=28.52 E-value=16 Score=14.72 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=62.9 Q ss_pred HHCCHHHHHHHHHHH---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HCCCHH Q ss_conf 862815789999999---------999836887788311369999999865077302347799999753-----038814 Q gi|254781211|r 86 KEAGVDARVAQKVVD---------KLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETREKDIARYFRK-----EKIPDN 151 (234) Q Consensus 86 keagvdarvaqkvvd---------klvdhgrkigeqfgasleeerkllqtklgsdyetrekdiaryfrk-----ekipdn 151 (234) .+..++.+.-+.+.- -.++|...++.+.|.+-+.-..+....-.+.+.-+++-+.+|-++ .+|.|. T Consensus 63 ~~~~L~~~~rEli~l~vS~~n~C~YC~~~H~~~~~~~g~~~~~~~~i~~~~~~~~~~~~e~all~~a~~l~~~~~~v~d~ 142 (190) T d2pfxa1 63 GESQLSKLEREMIAVVVSSINKCFYCLVAHGAAVRQLSGDPQLGEMLVMNYRVAPLDARQRVMLDFAAKMTRASAEIEEA 142 (190) T ss_dssp SSCSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHHCGGGSCCCHHHHHHHHHHHHHHHHGGGCCHH T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 01355699999999999998187378998999999806771654557764034214689999999999997376899999 Q ss_pred HHHHHHHH-HHH---------HHHHHHHHHHHH Q ss_conf 79999986-322---------567779999875 Q gi|254781211|r 152 DVQSLISA-WGF---------EKTFNFFDRYAQ 174 (234) Q Consensus 152 dvqslisa-wgf---------ektfnffdryaq 174 (234) +++.|-.+ |.- --.||++.|.+. T Consensus 143 ~~~~L~~~G~sd~eI~el~~~ia~~~~~nr~~~ 175 (190) T d2pfxa1 143 DREVLRSHGFNDRDIWDIANVTGFFNMTNRVAS 175 (190) T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999879999999999999999999999999 No 4 >d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=23.47 E-value=20 Score=14.13 Aligned_cols=73 Identities=12% Similarity=0.264 Sum_probs=51.6 Q ss_pred HCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHH Q ss_conf 11899998321200380020145678989998862815789999999999836887788311369999999865077302 Q gi|254781211|r 54 EAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYE 133 (234) Q Consensus 54 eagepkppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeqfgasleeerkllqtklgsdye 133 (234) -.|-||+|.--|-|-|-++.... +..+.+ ..+-.+.||+.+-.--++|+.-......-+.+ T Consensus 5 ~~~p~KrP~~ay~~F~~e~r~~~---------~~~~~~----------~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~~~ 65 (101) T d1v63a_ 5 SSGPKKPPMNGYQKFSQELLSNG---------ELNHLP----------LKERMVEIGSRWQRISQSQKEHYKKLAEEQQR 65 (101) T ss_dssp CCSSCCCCSSSHHHHHHHHHHHC---------TTTTSC----------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---------HHCCCC----------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 99978899989999999999997---------706989----------99999999999861999999999999999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 347799999753 Q gi|254781211|r 134 TREKDIARYFRK 145 (234) Q Consensus 134 trekdiaryfrk 145 (234) ...++++.|-.. T Consensus 66 ~y~~e~~~y~~~ 77 (101) T d1v63a_ 66 QYKVHLDLWVKS 77 (101) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHC T ss_conf 999999999842 No 5 >d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]} Probab=22.82 E-value=21 Score=14.05 Aligned_cols=45 Identities=38% Similarity=0.511 Sum_probs=29.3 Q ss_pred CCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998321200380020145678989998862815789999999999836887788 Q gi|254781211|r 58 PKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQ 112 (234) Q Consensus 58 pkppiedytlscpdyvseaevtahieafkeagvdarvaqkvvdklvdhgrkigeq 112 (234) -|--|+||| |+|..+-+..|-.+.... ..+..|.||+|=.+|-|. T Consensus 3 lK~~isDYT--------E~EFl~fl~~i~~~~~~~--~e~~~d~l~~hF~~iteH 47 (86) T d1ayia_ 3 LKNSISDYT--------EAEFVQLLKEIEKENVAA--TDDVLDVLLEHFVKITEH 47 (86) T ss_dssp CCSSGGGCC--------HHHHHHHHHHHHHHHTSS--SSHHHHHHHHHHHHHHCC T ss_pred CCHHHHHCC--------HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHCC T ss_conf 212141427--------999999999999656885--088999999999999708 No 6 >d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=16.56 E-value=28 Score=13.17 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 9999999983688778831136999999986 Q gi|254781211|r 96 QKVVDKLVDHGRKIGEQFGASLEEERKLLQT 126 (234) Q Consensus 96 qkvvdklvdhgrkigeqfgasleeerkllqt 126 (234) --++--+|-.+-..|+.||-||||.-..+-+ T Consensus 80 WSaafG~Vlq~~a~g~sfgysle~avavif~ 110 (121) T d2hkua2 80 WSAIFGLVIQKTATGESFGYSLEEAVAVIFA 110 (121) T ss_dssp HHHHHHHHHHHHHTTSCTTCSHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 9999999998442132004439999999997 No 7 >d1f6va_ a.49.1.1 (A:) C-terminal domain of B transposition protein {Bacteriophage mu [TaxId: 10677]} Probab=16.21 E-value=5.5 Score=17.77 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=17.1 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 975303881479999986322567 Q gi|254781211|r 142 YFRKEKIPDNDVQSLISAWGFEKT 165 (234) Q Consensus 142 yfrkekipdndvqslisawgfekt 165 (234) -++-.|--.+||++++.|||.+-. T Consensus 7 r~~i~k~kk~Di~Aia~AW~v~d~ 30 (91) T d1f6va_ 7 RTAINKTKKADVKAIADAWQINGE 30 (91) T ss_dssp TTCCSSCSGGGTTHHHHSSTTSSS T ss_pred HHHHCCCCHHHHHHHHHHHCCCCH T ss_conf 264048979899999999589988 No 8 >d2a5yb2 a.77.1.3 (B:1-108) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]} Probab=15.51 E-value=30 Score=13.00 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=43.7 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCC Q ss_conf 865077302347799999753038814799999863--225677799998751121123 Q gi|254781211|r 125 QTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAW--GFEKTFNFFDRYAQQNKESST 181 (234) Q Consensus 125 qtklgsdyetrekdiaryfrkekipdndvqslisaw--gfektfnffdryaqqnkesst 181 (234) .+.|-.|+|.| |.-.|.-.|+|-..|-|.|||.. ..+...||...|-.|..+-.. T Consensus 14 ~~~LiqDFEPR--DAl~yl~~e~IFTeD~selI~~M~~R~~Ri~nFlR~YRrqAs~L~P 70 (108) T d2a5yb2 14 HTRLIHDFEPR--DALTYLEGKNIFTEDHSELISKMSTRLERIANFLRIYRRQASELGP 70 (108) T ss_dssp HHHHHHHCCGG--GGHHHHHHTTSSCHHHHHHHHTSSSHHHHHHHHHHHHHHHCSSSHH T ss_pred HHHHHHCCCCC--CCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998716832--2210540351422458999998169999999999999987765517 No 9 >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Probab=13.45 E-value=34 Score=12.64 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=29.5 Q ss_pred CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHH Q ss_conf 899998321200380020145678989998862815 Q gi|254781211|r 56 GEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91 (234) Q Consensus 56 gepkppiedytlscpdyvseaevtahieafkeagvd 91 (234) ..-.-++.+..+++|-|.++.+--+-.+|.+.||.+ T Consensus 86 ~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~AGl~ 121 (137) T d1jcea1 86 GGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGAS 121 (137) T ss_dssp TSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCS T ss_pred HHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC T ss_conf 523763221589863164789999999999986998 No 10 >g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]} Probab=12.83 E-value=35 Score=12.56 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=22.0 Q ss_pred HHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 78831136999999986507730234779999975 Q gi|254781211|r 110 GEQFGASLEEERKLLQTKLGSDYETREKDIARYFR 144 (234) Q Consensus 110 geqfgasleeerkllqtklgsdyetrekdiaryfr 144 (234) |..||.+..|+---+.+..-+.....-..|.+||. T Consensus 103 GNNFGV~VQe~vl~~l~~ve~~a~~~~~~i~kY~~ 137 (200) T g1avo.1 103 GNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFS 137 (200) T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 87420999999999999999999999999999999 Done!