RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781211|ref|YP_003065624.1| hypothetical protein
CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62]
(234 letters)
>gnl|CDD|132216 TIGR03172, TIGR03172, probable selenium-dependent hydroxylase
accessory protein YqeC. This uncharacterized protein
family includes YqeC from Escherichia coli. A
phylogenetic profiling analysis shows correlation with
SelD, the selenium donor protein, even in species where
SelD contributes to neither selenocysteine nor
selenouridine biosynthesis. Instead, this family, and
families TIGR03309 and TIGR03310 appear to mark
selenium-dependent molybdenum hydroxylase maturation
systems.
Length = 232
Score = 33.2 bits (76), Expect = 0.062
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 50 SSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAH--IEAFKEAGVDARVAQKV-------VD 100
++T P+PP+ DY L+ D +VT A E RV+ KV VD
Sbjct: 31 TTTTRMFLPEPPLYDYFLTSHDGWVRDQVTKDTPRIAGIEFSALPRVSGKVRGFTPSTVD 90
Query: 101 KLVDHGR 107
L D
Sbjct: 91 DLSDFQH 97
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase,
formyltetrahydrofolate-dependent. In phylogenetic
analyses, the member from Saccharomyces cerevisiae shows
a long branch length but membership in the family, while
the formyltetrahydrofolate deformylases form a closely
related outgroup.
Length = 190
Score = 32.3 bits (74), Expect = 0.11
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 18/99 (18%)
Query: 80 AHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETR---E 136
A I+A KE + A V + +K +G + Q G +L K D+ +R +
Sbjct: 16 AIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGI----PTFVLSLK---DFPSREAFD 68
Query: 137 KDIARYFRKEKIPDNDVQSLISAWGFEK--TFNFFDRYA 173
+ I R + D L+ GF + F R+A
Sbjct: 69 QAIIEELRAHE-VD-----LVVLAGFMRILGPTFLSRFA 101
>gnl|CDD|162581 TIGR01887, dipeptidaselike, dipeptidase, putative. This model
represents a clade of probable zinc dipeptidases,
closely related to the characterized non-specific
dipeptidase, PepV. Many enzymes in this clade have been
given names including the terms "Xaa-His" and
"carnosinase" due to the early mis-characterization of
the Lactobacillus delbrueckii PepV enzyme. These names
are likely too specific.
Length = 447
Score = 31.6 bits (72), Expect = 0.17
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 128 LGSDYETREKDIARYFRKEKIPD 150
G+D ET I YF E+ PD
Sbjct: 136 FGTDEETGWACIDYYFEHEEAPD 158
>gnl|CDD|178379 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 29.4 bits (66), Expect = 0.82
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 10 PLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTE 53
P PS+ + S SNP SK + SSSS TE
Sbjct: 24 PPPSSLSLRHSNSSVSSNPISSKA----ISLTRCDAVSSSSYTE 63
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 29.0 bits (65), Expect = 0.94
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 9 TPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRN-PSSSSSSTEEAGEPKPPIE---D 64
V + + + DP+ R P+ + + EA P
Sbjct: 366 RLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAG 425
Query: 65 YTLSCPDYVSEAEVTAHIEAF-KEAGV---DARVAQKVVDKLVDHGRKIGEQF 113
L D ++ ++ + AF +EA + V+ ++ H ++ ++
Sbjct: 426 LALRWRDVLAALKMQ--LRAFLREARPHVEEGYVSLTFPERASFHYKQAQKKL 476
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 28.8 bits (64), Expect = 1.1
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 4 ETDQLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPK 59
E Q TP PST + + PP +K EA Q P PSS+ T ++ K
Sbjct: 39 EAPQSTP-PSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQSPTTK 93
>gnl|CDD|180927 PRK07318, PRK07318, dipeptidase PepV; Reviewed.
Length = 466
Score = 28.7 bits (65), Expect = 1.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 128 LGSDYETREKDIARYFRKEKIPD 150
+G+D E+ K + YF E+ PD
Sbjct: 148 VGTDEESGWKCMDYYFEHEEAPD 170
>gnl|CDD|180107 PRK05472, PRK05472, redox-sensing transcriptional repressor Rex;
Provisional.
Length = 213
Score = 28.9 bits (66), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 83 EAFKEAGVD-------ARVAQKVVDKLVDHGRK 108
E KE ++ A AQ+V D+LV+ G K
Sbjct: 140 EVVKENDIEIGILTVPAEAAQEVADRLVEAGIK 172
>gnl|CDD|132455 TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic
binding protein. Partial phylogenetic profiling
(PubMed:16930487) vs. the genome property of glycine
betaine biosynthesis from choline consistently reveals a
member of this ABC transporter periplasmic binding
protein as the best match, save for the betaine
biosynthesis enzymes themselves. Genomes often carry
several paralogs, one encoded together with the permease
and ATP-binding components and another encoded next to a
choline-sulfatase gene, suggesting that different
members of this protein family interact with shared
components and give some flexibility in substrate. Of
two members from Sinorhizobium meliloti 1021, one
designated ChoX has been shown experimentally to bind
choline (though not various related compounds such as
betaine) and to be required for about 60 % of choline
uptake. Members of this protein have an invariant Cys
residue near the N-terminus and likely are lipoproteins.
Length = 290
Score = 28.4 bits (64), Expect = 1.6
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 13/50 (26%)
Query: 65 YTLSCPDYVSEAEVT--AHIEAFK----------EAGVDA-RVAQKVVDK 101
YTL+ P YV++A + A I FK E G D R+ QK++DK
Sbjct: 93 YTLAVPTYVADAGLKSFADIAKFKDKLDGKIYGIEPGNDGNRLIQKMIDK 142
>gnl|CDD|165700 PLN00131, PLN00131, hypothetical protein; Provisional.
Length = 218
Score = 28.1 bits (62), Expect = 1.9
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 14/133 (10%)
Query: 26 SNPPPSKEEAV--QSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIE 83
S+ PS+ + S PQ + ++ E+ EP PP++D L V+ +
Sbjct: 88 SDAGPSRRPVLDLNSTPQPELDLNQPAAHEQEPEPAPPLDDQDL----LTKRKRVSEELR 143
Query: 84 AFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYETREKDIARYF 143
+ G R K+ D+L+D G E +R LL Y+ E+ R
Sbjct: 144 LLLQIGAVKR-KNKIADQLLD-------WMGLDNETDRTLLDDLYNHLYDLSEEQGRRVG 195
Query: 144 RKEKIPDNDVQSL 156
+ + ++SL
Sbjct: 196 QPQMFSSKGIKSL 208
>gnl|CDD|180861 PRK07157, PRK07157, acetate kinase; Provisional.
Length = 400
Score = 28.2 bits (63), Expect = 1.9
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 21/93 (22%)
Query: 82 IEAFKEAGVDARVA-----QKVVDKLVDHGRKIGEQ-----FGASLEEE----RKLLQTK 127
I+A + A+ A QK+VD L ++ KIG++ F A + E R+L+ K
Sbjct: 285 IKAAESGNKRAKFALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINK 344
Query: 128 LGS-----DYETREKDIARYFRKEKI--PDNDV 153
+ D E K I Y E I PD+D+
Sbjct: 345 INIPNIKLDKEKNLKKIGEYGPIELISTPDSDI 377
>gnl|CDD|169982 PRK09578, PRK09578, periplasmic multidrug efflux lipoprotein
precursor; Reviewed.
Length = 385
Score = 27.8 bits (62), Expect = 2.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 75 EAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKI 109
E+ ++A+++A V ARVA V + + G+++
Sbjct: 51 TVELPGRLDAYRQAEVRARVAGIVTARTYEEGQEV 85
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 27.2 bits (60), Expect = 3.6
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 2 SDETDQLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQG--------RNPSSSSSSTE 53
SD D P+P+ P E PP + +AV P + P+S +
Sbjct: 333 SDAADGPKPVPTKPVTPEAPSPPIEEEPP-QPKAVVPRPLSPYTAYEDLKPPTSPIPTPP 391
Query: 54 EAGEPKPPIEDYT--LSCPDYVSEAEVTAHIEAFKEAGVDARVAQ 96
+ D + PD V +++ + A V+A+ +
Sbjct: 392 SSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTR 436
>gnl|CDD|162811 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 27.0 bits (60), Expect = 3.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 135 REKDIARYFRKEKIPDNDVQS 155
+E DI RY + EKIP D++
Sbjct: 187 KEIDIKRYAKVEKIPGGDIED 207
>gnl|CDD|181710 PRK09225, PRK09225, threonine synthase; Validated.
Length = 462
Score = 27.0 bits (61), Expect = 4.2
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 128 LGSDYETREKDIARYFRKEKIPDNDVQSLISAWGFEKTFNFFD 170
LG Y +I F + IP++D++++I + + FD
Sbjct: 47 LGLSYAELAFEILSAFVGDDIPEDDLKAII-----ARAYTTFD 84
>gnl|CDD|177556 PHA03195, PHA03195, tegument protein VP11/12; Provisional.
Length = 746
Score = 26.9 bits (59), Expect = 4.4
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 2 SDETDQLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKP 60
S ET Q LPSTP +NP +E V + PQ +P S S+ + +P
Sbjct: 539 STET-QYITLPSTPS--PTGEVVYTNPLLGPDEEVDASPQPVDPVSDYSAPKNPDYMRP 594
>gnl|CDD|149460 pfam08406, CbbQ_C, CbbQ/NirQ/NorQ C-terminal. This domain is found
at the C-terminus of proteins of the CbbQ/NirQ/NorQ
family of proteins which play a role in the
post-translational activation of Rubisco. It is also
found in the Thauera aromatica TutH protein which is
similar to the CbbQ/NirQ/NorQ family, as well as in
putative chaperones. The ATPase family associated with
various cellular activities (AAA) pfam07728 is found in
the same bacterial and archaeal proteins as the domain
described here.
Length = 86
Score = 27.1 bits (61), Expect = 4.6
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 75 EAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEE 119
EAE+ A E+GVD A K+V +L R + G LEE
Sbjct: 1 EAEIVAK-----ESGVDEATAAKLV-RLAGRLRNLK---GHDLEE 36
>gnl|CDD|180169 PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylamino)uracil
reductase; Validated.
Length = 217
Score = 26.7 bits (60), Expect = 5.3
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 72 YVSEAEVTAHIEAFKEAGVDARVA-------QKVVDKLVDHG 106
VSEA + +E ++ G + VA +++ L + G
Sbjct: 99 AVSEAAPSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYERG 140
>gnl|CDD|165506 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 26.5 bits (58), Expect = 5.8
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 3 DETDQLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPI 62
D+T P+P++ P S PPP ++P S + +P P
Sbjct: 403 DQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEP----GSDDGPAPPPERQPPAPA 458
Query: 63 EDYTLSCPDYVSEAEVTA 80
+ PD + + A
Sbjct: 459 TEPAPDDPDDATRKALDA 476
Score = 26.5 bits (58), Expect = 6.0
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 5 TDQLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQG--RNPSSSSSSTEEAGEPKPP 61
+ P PS P V R + PP S D +G R P+ S + P PP
Sbjct: 2570 PPRPAPRPSEPAVTSRAR-RPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPP 2627
Score = 26.1 bits (57), Expect = 9.0
Identities = 11/54 (20%), Positives = 17/54 (31%)
Query: 7 QLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKP 60
P P + PPP + P R + +T+ AG +P
Sbjct: 2902 PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
>gnl|CDD|184075 PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional.
Length = 267
Score = 26.4 bits (59), Expect = 6.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 71 DYVSEAEVTAHIEAFKEAGVDARVAQ 96
D+ S A A +EAF + GV+ + +
Sbjct: 17 DFGSFAPTQAFVEAFAQFGVEITLEE 42
>gnl|CDD|184913 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 26.6 bits (59), Expect = 6.2
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 23 SQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLS 68
Q++ P + QS + +SS ++ + +++
Sbjct: 749 EQQATHQPQVQAEAQSPASTTALTQTSSEVQDTELNLVLLSSGSIT 794
>gnl|CDD|173619 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 26.4 bits (58), Expect = 7.3
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 3 DETDQLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPI 62
E D LPSTP + + S + P+ + + G +S + P+
Sbjct: 613 TEDDDAVELPSTPSMGTQDGSPAPSAAPAGYDIFEFAGDGTGAPHPVASGSNGAQHADPL 672
Query: 63 EDYTLSCPDYVSEAEVTAHIEAFKEA 88
D P + V A AF+ A
Sbjct: 673 GDLFSGLP-----STVGASSPAFQAA 693
>gnl|CDD|161747 TIGR00179, murB, UDP-N-acetylenolpyruvoylglucosamine reductase.
This model describes MurB,
UDP-N-acetylenolpyruvoylglucosamine reductase, which is
also called UDP-N-acetylmuramate dehydrogenase. It is
part of the pathway for the biosynthesis of the
UDP-N-acetylmuramoyl-pentapeptide that is a precursor of
bacterial peptidoglycan.
Length = 284
Score = 26.3 bits (58), Expect = 7.8
Identities = 11/31 (35%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 95 AQKVVDKLVDHGR-KIGEQFGASLEEERKLL 124
++ V+D L++H + ++GE++G LE E K++
Sbjct: 254 SEDVLD-LIEHVKAEVGEKYGILLEPEVKII 283
>gnl|CDD|162812 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 26.2 bits (58), Expect = 7.8
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 75 EAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLGSDYET 134
E ++ A+I+A ++GV+ V V + H E+ ++ K+ S +E
Sbjct: 265 ENQIEAYIKAIADSGVNVIVTGGSVGDMALH-----------YCEKYNIMVLKIPSKFEL 313
Query: 135 R 135
R
Sbjct: 314 R 314
>gnl|CDD|165548 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 25.7 bits (56), Expect = 9.6
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 5 TDQLTPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPS----SSSSSTEEAGEPKP 60
D P P + + P + + + + + ++ E G P P
Sbjct: 200 ADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAP 259
Query: 61 P 61
P
Sbjct: 260 P 260
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.308 0.126 0.355
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,800,038
Number of extensions: 235391
Number of successful extensions: 628
Number of sequences better than 10.0: 1
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 54
Length of query: 234
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 144
Effective length of database: 4,049,753
Effective search space: 583164432
Effective search space used: 583164432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (25.3 bits)