RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781211|ref|YP_003065624.1| hypothetical protein
CLIBASIA_05590 [Candidatus Liberibacter asiaticus str. psy62]
(234 letters)
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase;
HET: TAR TLA SRT MES; 1.9A {Bacillus firmus} (A:1-184)
Length = 184
Score = 29.8 bits (66), Expect = 0.28
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 159 AWGFEKTFNFFDRYAQQNKESSTGDTFVRSEGSQEADRDFDKVFNTPDFGSRVLSGDKEA 218
+ NF QN E+S + + +Q ++ + + + + A
Sbjct: 117 ESLVVSSGNFTGPGMSQNIEAS---LLLDNNTTQSMGFSWNDMISEMLNQNWHIHNMTNA 173
Query: 219 TKTLRQWAEK 228
T W
Sbjct: 174 TDASPGWNLL 183
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; structural
genomics, joint center for structural genomics, JCSG;
1.50A {Cytophaga hutchinsonii atcc 33406} (A:178-394)
Length = 217
Score = 29.8 bits (66), Expect = 0.33
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 73 VSEAEVTAHIEAFKEAGVDARVAQKVVD-----KLVDHGRKIGE 111
A I K+ ++A++ +V +L G + E
Sbjct: 170 TDAAHAEGXIAIAKKFNIEAKIIGRVEAPVAGKRLTITGPQGTE 213
>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid
biosynthesis, cytoplasm, diaminopimelate biosynthesis,
lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium
botulinum} PDB: 3ird_A* (A:)
Length = 291
Score = 29.4 bits (65), Expect = 0.42
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 78 VTAHIEAFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126
A I F GVD ++++ + GE + E ++ ++
Sbjct: 7 GVAIITPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKF 62
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} (A:449-527)
Length = 79
Score = 28.9 bits (65), Expect = 0.63
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 65 YTLSCPDYVSEAEVTAHIEAFKEAGVD 91
L+ + + V FKE D
Sbjct: 14 LYLTSTTGLPKDFVQNVENYFKENDYD 40
>3bhn_A THIJ/PFPI domain protein; YP_001094981.1, DJ-1 like
protein, DJ-1/PFPI family, structural genomics, joint
center for structural genomics; HET: MSE; 1.76A
{Shewanella loihica pv-4} (A:)
Length = 236
Score = 28.6 bits (63), Expect = 0.82
Identities = 2/25 (8%), Positives = 6/25 (24%)
Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
D ++ + + V
Sbjct: 29 DDFTDVDFFLXNDLLGRTSDSWTVR 53
>3lkd_A Type I restriction-modification system methyltransferase
subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural
genomics, PSI-2; 2.25A {Streptococcus thermophilus}
(A:25-170)
Length = 146
Score = 28.0 bits (62), Expect = 1.1
Identities = 13/120 (10%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 118 EEERKLLQTKLGSDYETREKDIARYFRKEKIPDNDVQSLISAWGF--EKTFNFFDRYAQQ 175
+ + +Y+ E+ ++ + + + F +
Sbjct: 25 LFFVAETXEEETESLDEALAVYRKYYEDEETHEDLLAVITDEXSYAIHPDLTFTALVERV 84
Query: 176 NKESSTGDTFVRS-EGSQEADRDFDKVFNTPDFGSRVLSG-DKEATKTLRQWAEKQATLN 233
N S + + +++D ++ +F D S+ L ++ +T+ ++ A L+
Sbjct: 85 NDGSFQLEDLAQGFRDIEQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVXKELAVLD 144
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid
biosynthesis, cytoplasm, diaminopimelate biosynthesis,
lyase, lysine biosynthesis; 1.50A {Hahella chejuensis}
(A:1-243)
Length = 243
Score = 27.8 bits (61), Expect = 1.1
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 78 VTAHIEAFKEAGVDARVAQKVVDKLVDHG-------RKIGEQFGASLEEERKLLQT 126
+ A I F VD + +VD + HG GE + EE ++++
Sbjct: 6 LIAMITPFINGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVAL 61
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural
genomics, unknown function; 1.65A {Escherichia coli}
(A:)
Length = 232
Score = 28.1 bits (61), Expect = 1.2
Identities = 10/74 (13%), Positives = 18/74 (24%)
Query: 70 PDYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFGASLEEERKLLQTKLG 129
D E + A +G A ++ GE + + + G
Sbjct: 19 YDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAXTETRNVLIEAARITRG 78
Query: 130 SDYETREKDIARYF 143
+ D A
Sbjct: 79 EIRPLAQADAAELD 92
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2;
structural genomics, protein structure initiative,
hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas
aeruginosa} (A:1-35,A:145-352)
Length = 243
Score = 28.0 bits (62), Expect = 1.3
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 8/76 (10%)
Query: 157 ISAWGFEKTFNFFDRYAQQNKESSTG---DTFVRSEGSQEADRDFDKVFNTPDFGSRVLS 213
+ + D + ++ + D + RDFD F G R S
Sbjct: 126 LGPRLIDSQSAALDCWVREYRGLLGIALTDCI----TTDAFLRDFDLYFAKLFDGLRHDS 181
Query: 214 GD-KEATKTLRQWAEK 228
GD + K
Sbjct: 182 GDPLLWAEKTIAHYLK 197
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural
genomics, structural genomics consortium, SGC,
alternative splicing, ATP-binding; 2.10A {Homo sapiens}
(A:)
Length = 90
Score = 27.2 bits (60), Expect = 1.9
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 43 RNPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91
+ SS E P S +++ ++ + + F AG +
Sbjct: 2 HHHHHHSSGRENLYFQGTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYN 50
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
apoptosis, ATP-binding, cytoplasm, endoplasmic
reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
{Homo sapiens} PDB: 3hdm_A* 3hdn_A* (A:1-121)
Length = 121
Score = 27.1 bits (59), Expect = 2.3
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 29 PPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTL 67
P + E + ++P S + + P D+
Sbjct: 4 QPQEPELMNANPAPPPAPSQQINLGPSSNPHAKPSDFHF 42
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing,
phosphorylation, rRNA processing, mRNA splicing, mRNA
transport; HET: ANP; 2.21A {Homo sapiens} (A:1-244)
Length = 244
Score = 26.7 bits (57), Expect = 2.5
Identities = 4/55 (7%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 44 NPSSSSSSTEEAGEPKPPIEDYTLSCPDYVSEAEVTAHIEAFKEAGVDARVAQKV 98
++ ++S + + +E F G+ + + +
Sbjct: 2 TTATMATSGSARKRLLKEEDMTKVE----FETSEEVDVTPTFDTMGLREDLLRGI 52
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI
superfamily, hydrolase, stress response; 2.15A
{Deinococcus radiodurans} (A:)
Length = 190
Score = 26.8 bits (58), Expect = 2.8
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 71 DYVSEAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKIGEQFG 114
D V E E+T+ A + AG + ++ I Q
Sbjct: 18 DGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEK 61
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and
ferritin-like domains; YP_324989.1, structural
genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc
29413} (A:1-206)
Length = 206
Score = 26.7 bits (58), Expect = 3.0
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
V + E K+AG + V
Sbjct: 19 QAVEDTEFIIPCNGLKQAGFEVVVL 43
>1sy7_A Catalase 1; heme oxidation, singlet oxygen,
oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa}
(A:532-715)
Length = 184
Score = 26.4 bits (57), Expect = 3.3
Identities = 4/25 (16%), Positives = 4/25 (16%)
Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
D A A V
Sbjct: 12 DGYDNVAYDAAYAAISANQAIPLVI 36
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis,
amino- acid biosynthesis, cytoplasm, diaminopimelate
biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB:
3di1_A 3di0_A (A:1-229)
Length = 229
Score = 26.5 bits (58), Expect = 3.4
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 78 VTAHIEAFKEAGVDARVAQKVVDKLVDHGRK-------IGEQFGASLEEERKLLQT 126
A F V+ + V+ L+++ + E + +E+ +L+T
Sbjct: 8 GVALTTPFTNNKVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKT 63
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG,
protein structure initiative, midwest center for
structural genomics; HET: FMN; 1.99A {Bacteroides
thetaiotaomicron vpi-5482} (A:)
Length = 175
Score = 26.3 bits (57), Expect = 3.9
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
+ V+ + ++EAF E G+ +V
Sbjct: 11 NPVNGCGLFQYLEAFFENGISYKVF 35
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange
factor, protein folding, acetylation, ATP-binding,
calmodulin-binding, chaperone, cytoplasm; HET: ATP;
2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A*
2qxl_A* (A:1-38,A:137-233,A:315-399)
Length = 220
Score = 26.1 bits (57), Expect = 3.9
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 61 PIEDYTLSCPDYVSEAEVTAHIEAFKEAGVD 91
I D ++ P + +E + +A + AG++
Sbjct: 39 NITDVCIAVPPWYTEEQRYNIADAARIAGLN 69
>2cvx_A Ribonucleoside-diphosphate reductase large chain 1;
eukaryotic, ribonucleotide reductase, DNTP regulation,
oxidoreductase; HET: DGT ADP; 2.20A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A*
(A:167-616,A:689-888)
Length = 650
Score = 26.0 bits (56), Expect = 4.3
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 9 TPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEP 58
P V +++ P +E + D + + EA E
Sbjct: 598 ESKVEVPEVPAPTKNEEKAAPIVDDEETEFDIYNSKVIACAIDNPEACEM 647
Score = 26.0 bits (56), Expect = 5.0
Identities = 8/61 (13%), Positives = 15/61 (24%)
Query: 9 TPLPSTPPVVECERSQRSNPPPSKEEAVQSDPQGRNPSSSSSSTEEAGEPKPPIEDYTLS 68
T + V E + P P+K E + + + +
Sbjct: 588 TKGMAELNVQESKVEVPEVPAPTKNEEKAAPIVDDEETEFDIYNSKVIACAIDNPEACEM 647
Query: 69 C 69
C
Sbjct: 648 C 648
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent
acyl-COA synthase, biotin biosynthesis,
8-amino-7-ketopelargonate synthase; 1.65A {Escherichia
coli} (A:23-76,A:264-384)
Length = 175
Score = 26.0 bits (57), Expect = 4.4
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 67 LSCPDYVSEAEVTAHIEAFKEAG 89
L+ ++ +E G
Sbjct: 153 LTLTAAHEMQDIDRLLEVLHGNG 175
>1g2i_A Protease I; intracellular protease, ATP-independent
intracellular protease, catalytical triad, PFPI,
cysteine protease, nucleophIle elbow; 2.00A {Pyrococcus
horikoshii} (A:)
Length = 166
Score = 25.9 bits (56), Expect = 4.7
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 71 DYVSEAEVTAHIEAFKEAGVDARVA 95
+ + E+ KE G + +A
Sbjct: 9 NEFEDVELIYPYHRLKEEGHEVYIA 33
>3iru_A Phoshonoacetaldehyde hydolase like protein;
phosphonoacetaldehyde hydrolase like protein,
structural genomics, PSI-2; 2.30A {Oleispira
antarctica} (A:27-112)
Length = 86
Score = 25.5 bits (56), Expect = 6.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 71 DYVSEAEVTAHIEAFKEAGVDARVAQ 96
D+ S A V A E FK+ G++ A+
Sbjct: 1 DFGSLAPVYAFXELFKQEGIEVTQAE 26
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase,
fatty acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A (A:617-685,A:744-752)
Length = 78
Score = 25.5 bits (56), Expect = 7.2
Identities = 4/29 (13%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 201 VFNTPDFGSRVLSGDKEATKTLRQWAEKQ 229
N+ + +SG + + K+
Sbjct: 28 CHNSK--DTVTISGPQAPVFEFVEQLRKE 54
>2iuf_A Catalase; compound I, hydrogen peroxide, oxidoreductase;
HET: NAG HDD; 1.71A {Penicillium janthinellum}
(A:512-688)
Length = 177
Score = 25.1 bits (54), Expect = 7.9
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 7/56 (12%)
Query: 44 NPSSSSSSTEEAGEPKPPIEDYT----LSCPDYVSEAEVTAHIEAFKEAGVDARVA 95
N ++ + GE ++ S S A+ A GVD V
Sbjct: 1 NTTAHIGAF---GEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVV 53
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A
{Escherichia coli} (A:)
Length = 291
Score = 24.9 bits (53), Expect = 8.8
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 69 CPDYVSEAEVTAHIEAFKEAGVDARVA 95
E + AG + VA
Sbjct: 69 FSTGNHPIETLLPLYHLHAAGFEFEVA 95
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine,
multienzyme, megasynthase, fatty acid synthesis; 3.2A
{Sus scrofa} PDB: 2vz9_A* (A:616-683,A:742-750)
Length = 77
Score = 25.1 bits (55), Expect = 9.7
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 201 VFNTPDFGSRVLSGDKEATKTLRQWAEKQ 229
N+ + +SG + A Q +++
Sbjct: 27 CHNSK--DTVTISGPQAAMSEFLQQLKRE 53
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase,
DNA binding, high salt, solution structure, DNA binding
protein; HET: DNA; NMR {Enterobacteria phage MU} (A:)
Length = 91
Score = 24.8 bits (54), Expect = 9.9
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 139 IARYFRKEKIPDNDVQSLISAWGFE 163
IA+ K DV+++ AW
Sbjct: 4 IAKRTAINKTKKADVKAIADAWQIN 28
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.308 0.126 0.355
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,749,669
Number of extensions: 77583
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 46
Length of query: 234
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 148
Effective length of database: 2,048,819
Effective search space: 303225212
Effective search space used: 303225212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.5 bits)