Query gi|254781212|ref|YP_003065625.1| hypothetical protein CLIBASIA_05595 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 109 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 23:03:48 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781212.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1eia_A EIAV capsid protein P2 35.3 16 0.00046 18.3 1.2 15 94-108 120-134 (137) 2 >2z00_A Dihydroorotase; zinc b 29.8 12 0.00036 19.0 -0.1 62 47-108 11-92 (158) 3 >3ba1_A HPPR, hydroxyphenylpyr 24.5 42 0.0012 15.9 1.8 34 1-34 114-150 (183) 4 >1m5y_A SurviVal protein, surv 24.3 50 0.0015 15.4 2.2 17 91-107 39-55 (110) 5 >3d31_A Sulfate/molybdate ABC 24.2 27 0.0008 17.0 0.8 41 49-89 27-67 (68) 6 >1dxy_A D-2-hydroxyisocaproate 21.2 31 0.00093 16.6 0.7 34 1-34 114-150 (197) 7 >1j4a_A D-LDH, D-lactate dehyd 20.7 39 0.0012 16.0 1.1 34 1-34 114-150 (197) 8 >2pv1_A Chaperone SURA; surviV 20.3 63 0.0019 14.8 2.1 16 92-107 37-52 (103) 9 >2d0i_A Dehydrogenase; structu 19.9 35 0.001 16.3 0.7 32 2-33 124-157 (192) 10 >12as_A Asparagine synthetase; 18.4 50 0.0015 15.4 1.2 19 16-34 250-268 (312) No 1 >>1eia_A EIAV capsid protein P26; viral capsid, HIV, lentivirus, viral protein; 2.70A {Equine infectious anemia virus} (A:1-137) Probab=35.27 E-value=16 Score=18.34 Aligned_cols=15 Identities=7% Similarity=0.255 Sum_probs=12.7 Q ss_pred CCHHHHHHHHCCCCC Q ss_conf 659999998626899 Q gi|254781212|r 94 LSFERIVQMYSDNPR 108 (109) Q Consensus 94 lsferivqmysdnpr 108 (109) |.+.+||+|||..|+ T Consensus 120 lgL~kiVrmysp~P~ 134 (137) T 1eia_A 120 EAMSEGIKVMIGKPK 134 (137) T ss_dssp HHHHHHHHHHHTSCC T ss_pred HHHHHHHHHHHCCCC T ss_conf 999998887507520 No 2 >>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus HB8} (A:1-50,A:319-426) Probab=29.80 E-value=12 Score=18.97 Aligned_cols=62 Identities=21% Similarity=0.358 Sum_probs=42.8 Q ss_pred CCCCCEEEHHHHHCCCCCCCCCCCCHHEEEEECCCCEE------EEE--------------EECCCCCCHHHHHHHHCCC Q ss_conf 78860510112340530001257520001010166325------688--------------7314686599999986268 Q gi|254781212|r 47 TPEGRFVLTDLMVEGGLLSSVSNDSAHQLALLEGKRSL------AVH--------------IASNCGLSFERIVQMYSDN 106 (109) Q Consensus 47 tpegrfvltdlmveggllssvsndsahqlallegkrsl------avh--------------iasncglsferivqmysdn 106 (109) ||+|.+.-.|+.+++|-...+....+-+.-=..|+--+ +.. ....-.+|.+++++|.+.| T Consensus 11 ~~~~~~~~~di~I~~g~I~~ig~~~~~~viDa~G~~v~PG~~~a~~g~~~~e~~l~~l~~~~v~~~~ls~~~~i~~~T~~ 90 (158) T 2z00_A 11 DARGERGPADVLIGEGRILSLEGGEAKQVVDGTGCFLAPGLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDG 90 (158) T ss_dssp ETTEEEEEEEEEEETTEEEESBCCCCSEEEECTTCEEEECTTTSCCCBCCTTTHHHHHHHHTHHHHCCCHHHHHHHHTHH T ss_pred CCCCCEEEEEEEEECCEEEEECCCCCCEEEECCCCEECCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99998877799998999999469999879989999986082346510000110232236778763898999999999899 Q ss_pred CC Q ss_conf 99 Q gi|254781212|r 107 PR 108 (109) Q Consensus 107 pr 108 (109) |. T Consensus 91 pA 92 (158) T 2z00_A 91 PR 92 (158) T ss_dssp HH T ss_pred HH T ss_conf 99 No 3 >>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor binding domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* (A:119-301) Probab=24.46 E-value=42 Score=15.86 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=23.2 Q ss_pred CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHH Q ss_conf 963999999998766---4225410448999775688 Q gi|254781212|r 1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEED 34 (109) Q Consensus 1 mvnfrkladmikskv---lsrgytvdsdalarqleed 34 (109) |+|-..++-|-+..+ .+||-.||.+||.+.|++. T Consensus 114 li~~~~l~~mk~ga~liN~~Rg~ivd~~aL~~aL~~g 150 (183) T 3ba1_A 114 IINREVIDALGPKGVLINIGRGPHVDEPELVSALVEG 150 (183) T ss_dssp CBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC T ss_conf 5689999997655565432553100115566676449 No 4 >>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:149-258) Probab=24.26 E-value=50 Score=15.44 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=9.1 Q ss_pred CCCCCHHHHHHHHCCCC Q ss_conf 46865999999862689 Q gi|254781212|r 91 NCGLSFERIVQMYSDNP 107 (109) Q Consensus 91 ncglsferivqmysdnp 107 (109) +-|.+|+.++..||++| T Consensus 39 ~~g~~F~~la~~ys~d~ 55 (110) T 1m5y_A 39 RNGADFGKLAIAHSADQ 55 (110) T ss_dssp HTTCCHHHHHHHHCCST T ss_pred HHHHHHHHHHHHHCCCH T ss_conf 40126899988703472 No 5 >>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} (A:275-342) Probab=24.21 E-value=27 Score=16.98 Aligned_cols=41 Identities=22% Similarity=0.153 Sum_probs=28.8 Q ss_pred CCCEEEHHHHHCCCCCCCCCCCCHHEEEEECCCCEEEEEEE Q ss_conf 86051011234053000125752000101016632568873 Q gi|254781212|r 49 EGRFVLTDLMVEGGLLSSVSNDSAHQLALLEGKRSLAVHIA 89 (109) Q Consensus 49 egrfvltdlmveggllssvsndsahqlallegkrslavhia 89 (109) .|-.+.-.+-...-+.+.++++|+..|.|-+|++-.|.--| T Consensus 27 ~~~~~~V~l~~g~~l~a~IT~~s~~~L~L~~G~~V~a~iKA 67 (68) T 3d31_A 27 LGALVRVKVDCGVPLNVLITRRSAEEMELSPGVQIYARFKA 67 (68) T ss_dssp CSSEEEEEEESSSEEEEEEETTHHHHSCCCTTCEEEEEECG T ss_pred ECCEEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEEEEH T ss_conf 29989999972996899996465322598989999999843 No 6 >>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} (A:101-297) Probab=21.19 E-value=31 Score=16.59 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.5 Q ss_pred CCCHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHH Q ss_conf 9639999999987664---225410448999775688 Q gi|254781212|r 1 MVNFRKLADMIKSKVL---SRGYTVDSDALARQLEED 34 (109) Q Consensus 1 mvnfrkladmikskvl---srgytvdsdalarqleed 34 (109) |+|-..++.|-+..++ +||-.||.+||.+-|++. T Consensus 114 li~~~~l~~mk~~a~liN~~RG~iVd~~aL~~aL~~g 150 (197) T 1dxy_A 114 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG 150 (197) T ss_dssp SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT T ss_pred CCCHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC T ss_conf 5489999736998389953576532899999999829 No 7 >>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} (A:103-299) Probab=20.67 E-value=39 Score=16.02 Aligned_cols=34 Identities=41% Similarity=0.570 Sum_probs=23.5 Q ss_pred CCCHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHH Q ss_conf 963999999998766---4225410448999775688 Q gi|254781212|r 1 MVNFRKLADMIKSKV---LSRGYTVDSDALARQLEED 34 (109) Q Consensus 1 mvnfrkladmikskv---lsrgytvdsdalarqleed 34 (109) |+|-..++-|-+..+ .+||-.||.+||.+.|.+. T Consensus 114 li~~~~l~~mk~~a~lvN~~RG~iVd~~aL~~aL~~g 150 (197) T 1j4a_A 114 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 150 (197) T ss_dssp CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCC T ss_conf 2119998424899699980465435689999999759 No 8 >>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} (A:) Probab=20.27 E-value=63 Score=14.83 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=7.1 Q ss_pred CCCCHHHHHHHHCCCC Q ss_conf 6865999999862689 Q gi|254781212|r 92 CGLSFERIVQMYSDNP 107 (109) Q Consensus 92 cglsferivqmysdnp 107 (109) -|-+|+.+++.||++| T Consensus 37 ~g~~F~~la~~~S~d~ 52 (103) T 2pv1_A 37 NGADFGKLAIAHSADQ 52 (103) T ss_dssp TTCCHHHHHHHHCCST T ss_pred CCCCHHHHHHHHCCCC T ss_conf 6999899964431366 No 9 >>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} (A:95-286) Probab=19.88 E-value=35 Score=16.34 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=20.1 Q ss_pred CCHHHHHHHHHHHH--HHCCCCCCHHHHHHHHHH Q ss_conf 63999999998766--422541044899977568 Q gi|254781212|r 2 VNFRKLADMIKSKV--LSRGYTVDSDALARQLEE 33 (109) Q Consensus 2 vnfrkladmikskv--lsrgytvdsdalarqlee 33 (109) +|...++-|-+.-+ -+||-.||.+||.+.|++ T Consensus 124 i~~~~l~~mk~~a~ivn~Rg~~vd~~aL~~aL~~ 157 (192) T 2d0i_A 124 INEERVKKLEGKYLVNIGRGALVDEKAVTEAIKQ 157 (192) T ss_dssp BCHHHHHHTBTCEEEECSCGGGBCHHHHHHHHHT T ss_pred EEECHHCCCCCCCEEECCCCHHHHHHHHHHHHHC T ss_conf 2200001234422257677444311689988743 No 10 >>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli} (A:1-312) Probab=18.44 E-value=50 Score=15.42 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=15.6 Q ss_pred HHCCCCCCHHHHHHHHHHH Q ss_conf 4225410448999775688 Q gi|254781212|r 16 LSRGYTVDSDALARQLEED 34 (109) Q Consensus 16 lsrgytvdsdalarqleed 34 (109) -|-|..||.++|.+||+.. T Consensus 250 SSMGIRVd~~~L~~QL~~~ 268 (312) T 12as_A 250 SSMGIRVDADTLKHQLALT 268 (312) T ss_dssp EEEEEBCCHHHHHHHHHHH T ss_pred ECCEEEECHHHHHHHHHHC T ss_conf 3563688899999999975 Done!