RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781212|ref|YP_003065625.1| hypothetical protein
CLIBASIA_05595 [Candidatus Liberibacter asiaticus str. psy62]
         (109 letters)



>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 27.5 bits (61), Expect = 0.31
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 18/70 (25%)

Query: 38  IRHYKHVYSTPEGRFVLTDLMVEGG-------------LLSSVSNDSAHQLALLEGKRSL 84
           +R    +Y       +L  L +  G                +  +   H LA L G  SL
Sbjct: 128 MRTNGDLYQGAIFLLILASLALFAGWLHLQPKFRPSLSWFKNAESRLNHHLAGLFGVSSL 187

Query: 85  A-----VHIA 89
           A     +H+A
Sbjct: 188 AWAGHLIHVA 197


>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic
           domain {Escherichia coli [TaxId: 562]}
          Length = 284

 Score = 25.5 bits (54), Expect = 1.2
 Identities = 9/92 (9%), Positives = 23/92 (25%)

Query: 16  LSRGYTVDSDALARQLEEDERRIRHYKHVYSTPEGRFVLTDLMVEGGLLSSVSNDSAHQL 75
             +G T+D  +   +       I              + +D            N +   +
Sbjct: 183 ARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIGV 242

Query: 76  ALLEGKRSLAVHIASNCGLSFERIVQMYSDNP 107
           A  E        +  +   S    ++  + + 
Sbjct: 243 AGFETLLETVQVLVKDYDFSISDALRPLTSSV 274


>d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP
          {Clostridium pasteurianum, MOP II [TaxId: 1501]}
          Length = 67

 Score = 25.4 bits (56), Expect = 1.4
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 8/42 (19%)

Query: 57 LMVEGG--LLSSVSNDSAHQLALLEGKR------SLAVHIAS 90
          L + GG  + S +S DS  +L + EG        S  V I +
Sbjct: 26 LEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 67


>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli
           [TaxId: 562]}
          Length = 327

 Score = 25.4 bits (56), Expect = 1.5
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 17  SRGYTVDSDALARQLEE--DERRIRHYKH 43
           S G  VD+D L  QL    DE R+    H
Sbjct: 248 SMGIRVDADTLKHQLALTGDEDRLELEWH 276


>d1h9ma1 b.40.6.2 (A:1-73) Cytoplasmic molybdate-binding protein
          ModG {Azotobacter vinelandii [TaxId: 354]}
          Length = 73

 Score = 25.1 bits (55), Expect = 1.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 53 VLTDLMVEGGLLSSVSNDSAHQLALLEGKRSLAV 86
          V   L     L + V+ +SA  L L  GK  +AV
Sbjct: 25 VDILLGGGDKLAAVVTLESARSLQLAAGKEVVAV 58


>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE)
           {Pseudomonas diminuta [TaxId: 293]}
          Length = 331

 Score = 25.1 bits (53), Expect = 1.9
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 93  GLSFERIVQMYSDNPR 108
           G+  E +  +   NP 
Sbjct: 306 GVPQETLAGITVTNPA 321


>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein
          ModG {Azotobacter vinelandii [TaxId: 354]}
          Length = 68

 Score = 24.6 bits (54), Expect = 2.6
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 57 LMVEGG--LLSSVSNDSAHQLALLEGKRSLAV 86
          L ++GG  + S V+ ++  +L L  G  + AV
Sbjct: 26 LALQGGTEITSMVTKEAVAELGLKPGASASAV 57


>d1e6va2 d.58.31.2 (A:8-272) Alpha chain {Archaeon Methanopyrus
          kandleri [TaxId: 2320]}
          Length = 265

 Score = 24.5 bits (53), Expect = 2.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 33 EDERRIRHYKHVYSTPEGRFVL-------TDLMVEGGLLSSVSNDSAHQL 75
           +ER + HY      P G+  L       TD+ VEG  L+ V+N +  Q+
Sbjct: 44 VEERGVPHYNPDIGVPLGQRKLMSYQVSGTDVFVEGDDLTFVNNAAMQQM 93


>d1fr3a_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP
          {Sporomusa ovata [TaxId: 2378]}
          Length = 67

 Score = 24.2 bits (53), Expect = 3.0
 Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 47 TPEGRFVLTDLMVEGG-LLSSVSNDSAHQLALLEGKR------SLAVHIA 89
                    +  +G  L+++++ DS   L L+ G +      +  + + 
Sbjct: 17 VKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKATEMEVL 66


>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
           coli [TaxId: 562]}
          Length = 264

 Score = 24.2 bits (51), Expect = 3.0
 Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 76  ALLEGKRSLAVHIASNCGLSFERIVQMYSDN 106
            L    R+LA   A   GL    +   Y D 
Sbjct: 221 LLAAKDRTLAAATAKAEGLYLVAVD--YPDR 249


>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 268

 Score = 24.1 bits (52), Expect = 3.5
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 33 EDERRIRHYKHVYSTPEGRFVL-------TDLMVEGGLLSSVSNDSAHQL 75
            +R I  Y     TP G+ VL       TD  VEG  L  V+N +  Q+
Sbjct: 47 AAKRGIPQYNPDIGTPLGQRVLMPYQVSTTDTYVEGDDLHFVNNAAMQQM 96


>d1w2ya_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
           {Campylobacter jejuni [TaxId: 197]}
          Length = 229

 Score = 23.9 bits (51), Expect = 4.2
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 9/86 (10%)

Query: 20  YTVDSDALARQLEEDERRIRHYKHVYSTPEGRF--VLTDLMVEGGLLSSVSNDSAHQLAL 77
              D  A+A ++          K      EG    +L D+ +     S    +    L+ 
Sbjct: 94  NNKDFKAIATEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLST 153

Query: 78  LEGKRSLAVHIASNCGLSFERIVQMY 103
                     +A  CGL+ E + + Y
Sbjct: 154 YFT-------LAIKCGLNLEILYKTY 172


>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 350

 Score = 23.8 bits (51), Expect = 4.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 74  QLALLEGKRSLAVHIASNCGLSFERIVQMYSDNPRY 109
           +LA+ +   SLAVHIA +  +  E I ++   +   
Sbjct: 150 KLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPC 185


>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
           {Escherichia coli [TaxId: 562]}
          Length = 396

 Score = 23.4 bits (49), Expect = 5.1
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 32  EEDERRIRHYKHVYSTPEGRF 52
           +E   R+R    VY+   GR 
Sbjct: 355 KEQVLRLREEFGVYAVASGRV 375


>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 310

 Score = 23.4 bits (49), Expect = 5.7
 Identities = 5/26 (19%), Positives = 15/26 (57%)

Query: 83  SLAVHIASNCGLSFERIVQMYSDNPR 108
             A+ +     +S +++++M++ NP 
Sbjct: 277 PSALELYRKGIISLKKLIEMFTINPA 302


>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
           {Paracoccus denitrificans [TaxId: 266]}
          Length = 394

 Score = 23.0 bits (48), Expect = 6.4
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 32  EEDERRIRHYKHVYSTPEGRF 52
            E  +RI+    +Y   + R 
Sbjct: 352 PEQVKRIKEEFGIYMVGDSRI 372


>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
           scrofa), cytosolic form [TaxId: 9823]}
          Length = 412

 Score = 23.0 bits (48), Expect = 6.4
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 32  EEDERRIRHYKHVYSTPEGRF 52
            +    + + KH+Y  P GR 
Sbjct: 367 PKQVEYLINQKHIYLLPSGRI 387


>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 184

 Score = 23.0 bits (48), Expect = 6.7
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 75  LALLEGKRSLAVHIASNCGLSFERIVQMYSDNPRY 109
           L  L GK  L  ++AS  G +     QM     R 
Sbjct: 19  LGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRL 53


>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
          {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 23.2 bits (49), Expect = 6.8
 Identities = 5/28 (17%), Positives = 14/28 (50%)

Query: 25 DALARQLEEDERRIRHYKHVYSTPEGRF 52
          + + RQ+   +R +  +++  +   GR 
Sbjct: 21 ECIFRQMPATQRVLFLWRNADTVVIGRA 48


>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
          thermophilus, strain hb27 [TaxId: 274]}
          Length = 110

 Score = 23.0 bits (49), Expect = 7.2
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 4  FRKLADMIKSKVLSRGYTVDSDALARQLEEDERR 37
           R+  ++    +  +G  +D +AL   L  D   
Sbjct: 7  LRQEPEVFHRAIREKGVALDLEAL---LALDREV 37


>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 334

 Score = 23.0 bits (49), Expect = 7.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 73  HQLALLEGKRSLAVHIASNCGLSFERIVQMYSDNP 107
            +LAL +   SLAV+++ +  +  E I +M    P
Sbjct: 131 KKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLP 165


>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
           {Escherichia coli [TaxId: 562]}
          Length = 397

 Score = 23.0 bits (48), Expect = 7.7
 Identities = 6/21 (28%), Positives = 7/21 (33%)

Query: 32  EEDERRIRHYKHVYSTPEGRF 52
                R+R    VY    GR 
Sbjct: 356 AAQVDRLREEFGVYLIASGRM 376


>d1e6ya2 d.58.31.2 (A:1002-1283) Alpha chain {Archaeon
           Methanosarcina barkeri [TaxId: 2208]}
          Length = 282

 Score = 22.6 bits (48), Expect = 8.3
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 9/52 (17%)

Query: 33  EDERRIRHY--KHVYSTPEGRFVL-------TDLMVEGGLLSSVSNDSAHQL 75
            ++R I  Y        P G+  +       TD++ E   L  V+N +  Q+
Sbjct: 59  AEKRGIAFYNPMMHSGAPLGQRAITPYTISGTDIVCEPDDLHYVNNAAMQQM 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 381,731
Number of extensions: 15170
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 28
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)