RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781213|ref|YP_003065626.1| head-to-tail joining protein,
putative [Candidatus Liberibacter asiaticus str. psy62]
         (556 letters)



>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 133

 Score = 29.1 bits (65), Expect = 0.85
 Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 501 AEVEDIRQQREVQRRVMEEQHLQQQLQQTSQDIG----AKAAGRAMEKKLTHDMM 551
           A + +I  Q  + +   + + +QQQ++     I      +     ++ K   + +
Sbjct: 1   AALAEIVAQLNIYQS--QVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETL 53


>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
           {Hyphomicrobium methylovorum [TaxId: 84]}
          Length = 129

 Score = 28.8 bits (64), Expect = 1.3
 Identities = 6/31 (19%), Positives = 11/31 (35%)

Query: 473 CMDHMDTDRVSRFSLWATNTPAVLIRDTAEV 503
             DH+D D      +   N P    +   ++
Sbjct: 77  GFDHIDLDACKARGIKVGNAPHGATQAREDM 107


>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon
           Methanosarcina thermophila [TaxId: 2210]}
          Length = 210

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 481 RVSRFSLWATNTPAVLIRDTAEVEDIRQQREVQRRVMEEQHLQQQLQQTS 530
            +    +  +   A  + +  +        E    V    HL +  ++TS
Sbjct: 163 YIPAGMVVTSQAEADKLPEVTDDYAYSHTNEAVVYV--NVHLAEGYKETS 210


>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 134

 Score = 25.7 bits (56), Expect = 9.1
 Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 3/42 (7%)

Query: 65  ITPPGQK-WHGLAESFSAYQAFLYKEDARSKKVREWCDQVTD 105
             PP    WHG A         +           EW   VT+
Sbjct: 85  EIPPNVVHWHG-AAPDEELV-HIGISTQVHLGPAEWLGSVTE 124


>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 191

 Score = 25.5 bits (55), Expect = 9.9
 Identities = 3/23 (13%), Positives = 8/23 (34%)

Query: 103 VTDTLFGFRERSRSGFVGCLQSF 125
           +        +       GC++S+
Sbjct: 166 IPFHEKDLVQPINPRLDGCMRSW 188


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,983,959
Number of extensions: 91277
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 13
Length of query: 556
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 466
Effective length of database: 1,171,896
Effective search space: 546103536
Effective search space used: 546103536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)