BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781214|ref|YP_003065627.1| hypothetical protein
CLIBASIA_05605 [Candidatus Liberibacter asiaticus str. psy62]
(110 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040891|gb|ACT57687.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120679|gb|ADV02502.1| hypothetical protein SC1_gp110 [Liberibacter phage SC1]
gi|317120823|gb|ADV02644.1| hypothetical protein SC1_gp110 [Candidatus Liberibacter asiaticus]
Length = 110
Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MSFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGK 60
MSFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGK
Sbjct: 1 MSFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGK 60
Query: 61 KEEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPARRFTSSSLLSGVHVR 110
KEEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPARRFTSSSLLSGVHVR
Sbjct: 61 KEEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPARRFTSSSLLSGVHVR 110
>gi|197294457|ref|YP_001798998.1| hypothetical protein PAa_0382 [Candidatus Phytoplasma australiense]
gi|171853784|emb|CAM11717.1| Conserved hypothetical protein [Candidatus Phytoplasma australiense]
Length = 1164
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 6 SSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAG--------LYSEWDTIGGFFG 53
+++ G S +G +G+ G G IG +GGAAG + S+WD + +FG
Sbjct: 1108 AAINIGVSTKAGVMVGATLGSAAGPIGTFLGGAAGGVISAAVAVASKWDVVKTWFG 1163
>gi|71418579|ref|XP_810899.1| pyridoxal kinase [Trypanosoma cruzi strain CL Brener]
gi|70875500|gb|EAN89048.1| pyridoxal kinase, putative [Trypanosoma cruzi]
Length = 300
Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 13 SLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGKKEEEGVRPLEGD 72
+L G + + +I G + A + S DT+ +KEGKK P+ GD
Sbjct: 64 TLMEGMRANNFLPSYRYIITGYINNADIVRSIRDTVKEIRTLREKEGKKLTFFCDPVMGD 123
Query: 73 ELAEVRRQESLRAYE--MNRIPIPARRFTSSSLLSGVHV 109
+ +QE L AY + + + +SLLSGV+V
Sbjct: 124 DGVMYCKQEVLEAYRELIQCADVATPNYYEASLLSGVNV 162
>gi|296241810|ref|YP_003649297.1| geranylgeranylglycerol-phosphate geranylgeranyltransferase
[Thermosphaera aggregans DSM 11486]
gi|296094394|gb|ADG90345.1| geranylgeranylglycerol-phosphate geranylgeranyltransferase
[Thermosphaera aggregans DSM 11486]
Length = 288
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 18 FKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGKKEEEGVRPLEGDELAEV 77
K SI GP+ GV+ G++GGA+ LY I G+ SS G ++ E
Sbjct: 207 LKACSILGPLTGVLAGVLGGASILYLTLILIAGYLYSSSLFKTCRNPG-----DKQVLED 261
Query: 78 RRQESLRA 85
R+ +L+A
Sbjct: 262 SRRNTLKA 269
>gi|323969108|gb|EGB64413.1| hypothetical protein ERHG_04812 [Escherichia coli TA007]
Length = 571
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 3 FLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAG-LYSEWDTIGGFFGSSQKEGKK 61
F ++K GS SG +GSIF VIG L+G A G L T+ G F S + +K
Sbjct: 432 FSSMALKVGSYAMSGSAIGSIFP----VIGSLVGSALGALVGIIMTVAGIFTSKASKIRK 487
Query: 62 EEEGVRPLEGDELAEVR 78
+ VR D L EVR
Sbjct: 488 AQGKVR----DRLEEVR 500
>gi|42520427|ref|NP_966342.1| prophage P2W3, tail tape measure protein [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|15212238|gb|AAK85310.1| phage-related tail protein [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410166|gb|AAS14276.1| prophage P2W3, tail tape measure protein [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 680
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 SFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGS 54
SFL ++V ++ +G + ++ P+G +I GL+ GAA + + W + FF S
Sbjct: 481 SFLSATV--FPAVVTGLRAVTLANPIGLLITGLVTGAALVITNWQKVKDFFSS 531
>gi|311105269|ref|YP_003978122.1| tape measure domain-containing protein [Achromobacter xylosoxidans
A8]
gi|310759958|gb|ADP15407.1| tape measure domain protein [Achromobacter xylosoxidans A8]
Length = 782
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 26 PVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGKKE 62
P+G +IG ++ G ++ WD+I FFG + E KK+
Sbjct: 590 PLGRIIGLVLAGLLLIWQNWDSISKFFGETWDEFKKK 626
>gi|312887141|ref|ZP_07746745.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
18603]
gi|311300453|gb|EFQ77518.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
18603]
Length = 362
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 1 MSFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGK 60
+ FLD+++ + S K+ ++ VG +IGG+M G +G++ I + G
Sbjct: 283 VQFLDNNILMPRIVGSQVKINALVSIVGIIIGGVMAGLSGMFLAMPIISILKIVFDRSGN 342
Query: 61 KEEEGVRPLEGDE 73
++ GV L GDE
Sbjct: 343 YKQWGV--LLGDE 353
>gi|77458888|ref|YP_348394.1| hypothetical protein Pfl01_2663 [Pseudomonas fluorescens Pf0-1]
gi|77382891|gb|ABA74404.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 543
Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 16 SGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGKKEEEGV 66
SGF +G+ F +G ++G ++GG G+++ G F G K+ + +E V
Sbjct: 421 SGFSIGTFFPVIGNIVGAIVGGVIGVFAA--AFGYFLGGRGKKIAEAQEQV 469
>gi|156100839|ref|XP_001616113.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148804987|gb|EDL46386.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 5707
Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 10 FGSSLSSGFKLGSIFGPV----GGVIGGLMGGAAGLY-SEWDTIGGFFGSSQKEG 59
FGS+ SG G +FG GG+ GG GL+ S + GG FGS+Q+ G
Sbjct: 2487 FGSAQQSG---GGLFGGAQQSGGGLFGGAQQSGGGLFGSAQQSGGGLFGSAQQSG 2538
>gi|119382790|ref|YP_913846.1| binding-protein-dependent transport systems inner membrane
component [Paracoccus denitrificans PD1222]
gi|119372557|gb|ABL68150.1| binding-protein-dependent transport systems inner membrane
component [Paracoccus denitrificans PD1222]
Length = 243
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 13 SLSSGFKLGSIFGPVGGVIGGLMGGAAGL 41
SL++G +L +++ P+G VIG +GGA GL
Sbjct: 168 SLATGLRLAAVYAPIGAVIGEWVGGARGL 196
>gi|317500213|ref|ZP_07958444.1| hypothetical protein HMPREF1026_00386 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087559|ref|ZP_08336490.1| hypothetical protein HMPREF1025_00073 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316898384|gb|EFV20424.1| hypothetical protein HMPREF1026_00386 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330400699|gb|EGG80303.1| hypothetical protein HMPREF1025_00073 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 561
Score = 33.9 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 1 MSFLDSSVKFGSSLSSGFK-----LGSIFGPVGGVIGGLMGGAAG----LYSEWDTIGGF 51
+S + +SV FG +G K LG +G GG +G ++G AAG L+ W GG
Sbjct: 178 VSIVGASVLFGMGSRAGEKAGEELLGPAYGAAGGTLGTVIGAAAGLLFLLFVLWIFKGGI 237
Query: 52 FGSSQKEGKKEEE 64
Q++ K +E
Sbjct: 238 RRQIQRDHTKGKE 250
>gi|159043458|ref|YP_001532252.1| binding-protein-dependent transport systems inner membrane
component [Dinoroseobacter shibae DFL 12]
gi|157911218|gb|ABV92651.1| binding-protein-dependent transport systems inner membrane
component [Dinoroseobacter shibae DFL 12]
Length = 244
Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 13 SLSSGFKLGSIFGPVGGVIGGLMGGAAGL 41
SL SGFKL +++ P+G VIG +G + GL
Sbjct: 170 SLGSGFKLAAVYAPIGAVIGEWVGSSQGL 198
>gi|317407404|gb|EFV87367.1| hypothetical protein HMPREF0005_05331 [Achromobacter xylosoxidans
C54]
Length = 1092
Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 15 SSGFKLGSIFGPVGGVIGGLMGGAAG-LYSEWDTIGGFFGSSQKEGKKE 62
S+G GS FGP+G VIG +G A G + SE ++ G SQ EG+ E
Sbjct: 301 SAGVLAGSFFGPLGVVIGSQVGAAIGTVLSEQESTGT--SRSQAEGRSE 347
>gi|117920477|ref|YP_869669.1| hypothetical protein Shewana3_2032 [Shewanella sp. ANA-3]
gi|117612809|gb|ABK48263.1| conserved hypothetical protein [Shewanella sp. ANA-3]
Length = 542
Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 7 SVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAA-----GLYSEWDTIGGFFGSSQKEGKK 61
+ + GS SGF +GS F PV G I G +GGA GL+ G F S +K +
Sbjct: 409 AFQVGSYALSGFTIGSAF-PVIGNIAGAIGGAVLGIVMGLF-------GLFTSKEKRIRN 460
Query: 62 EEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPAR 96
+ VR E E E L E N I AR
Sbjct: 461 AKSEVR-----EKIEAVCDEKLATIESNVAKIVAR 490
>gi|293382313|ref|ZP_06628252.1| putative M23 peptidase domain protein [Enterococcus faecalis R712]
gi|293389425|ref|ZP_06633883.1| putative M23 peptidase domain protein [Enterococcus faecalis S613]
gi|312907445|ref|ZP_07766436.1| peptidase, M23 family [Enterococcus faecalis DAPTO 512]
gi|312910063|ref|ZP_07768910.1| peptidase, M23 family [Enterococcus faecalis DAPTO 516]
gi|291080258|gb|EFE17622.1| putative M23 peptidase domain protein [Enterococcus faecalis R712]
gi|291081312|gb|EFE18275.1| putative M23 peptidase domain protein [Enterococcus faecalis S613]
gi|310626473|gb|EFQ09756.1| peptidase, M23 family [Enterococcus faecalis DAPTO 512]
gi|311289336|gb|EFQ67892.1| peptidase, M23 family [Enterococcus faecalis DAPTO 516]
Length = 1722
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 4/29 (13%)
Query: 16 SGFKLGSI----FGPVGGVIGGLMGGAAG 40
+G KLG++ FGP+G VIGG++G AAG
Sbjct: 671 AGAKLGAVAGTTFGPIGTVIGGILGTAAG 699
>gi|153816464|ref|ZP_01969132.1| hypothetical protein RUMTOR_02717 [Ruminococcus torques ATCC 27756]
gi|145846206|gb|EDK23124.1| hypothetical protein RUMTOR_02717 [Ruminococcus torques ATCC 27756]
Length = 575
Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 1 MSFLDSSVKFGSSLSSGFK-----LGSIFGPVGGVIGGLMGGAAG----LYSEWDTIGGF 51
+S + +SV FG +G K LG +G GG +G ++G AAG L+ W GG
Sbjct: 192 VSIVGASVLFGMGSRAGEKAGEELLGPAYGAAGGTLGTVIGAAAGLLFLLFVLWIFKGGI 251
Query: 52 FGSSQKEGKKEEE 64
Q++ K +E
Sbjct: 252 RRQIQRDHTKGKE 264
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040891|gb|ACT57687.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120679|gb|ADV02502.1| hypothetical protein SC1_gp110 [Liberibacter phage SC1]
gi|317120823|gb|ADV02644.1| hypothetical protein SC1_gp110 [Candidatus Liberibacter asiaticus]
Length = 110
Score = 204 bits (519), Expect = 3e-51, Method: Composition-based stats.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MSFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGK 60
MSFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGK
Sbjct: 1 MSFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGK 60
Query: 61 KEEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPARRFTSSSLLSGVHVR 110
KEEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPARRFTSSSLLSGVHVR
Sbjct: 61 KEEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPARRFTSSSLLSGVHVR 110
>gi|197294457|ref|YP_001798998.1| hypothetical protein PAa_0382 [Candidatus Phytoplasma australiense]
gi|171853784|emb|CAM11717.1| Conserved hypothetical protein [Candidatus Phytoplasma australiense]
Length = 1164
Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 6 SSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAG--------LYSEWDTIGGFFG 53
+++ G S +G +G+ G G IG +GGAAG + S+WD + +FG
Sbjct: 1108 AAINIGVSTKAGVMVGATLGSAAGPIGTFLGGAAGGVISAAVAVASKWDVVKTWFG 1163
>gi|159043458|ref|YP_001532252.1| binding-protein-dependent transport systems inner membrane
component [Dinoroseobacter shibae DFL 12]
gi|157911218|gb|ABV92651.1| binding-protein-dependent transport systems inner membrane
component [Dinoroseobacter shibae DFL 12]
Length = 244
Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 13 SLSSGFKLGSIFGPVGGVIGGLMGGAAGL 41
SL SGFKL +++ P+G VIG +G + GL
Sbjct: 170 SLGSGFKLAAVYAPIGAVIGEWVGSSQGL 198
>gi|162452218|ref|YP_001614585.1| hypothetical protein sce3945 [Sorangium cellulosum 'So ce 56']
gi|161162800|emb|CAN94105.1| putative membrane protein [Sorangium cellulosum 'So ce 56']
Length = 87
Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 17 GFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGS 54
GF + ++ G G ++GG +G A GLY + + GGFF S
Sbjct: 28 GFVVTALLGVAGSLLGGFIGRALGLYPSYQSSGGFFTS 65
>gi|119382790|ref|YP_913846.1| binding-protein-dependent transport systems inner membrane
component [Paracoccus denitrificans PD1222]
gi|119372557|gb|ABL68150.1| binding-protein-dependent transport systems inner membrane
component [Paracoccus denitrificans PD1222]
Length = 243
Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 13 SLSSGFKLGSIFGPVGGVIGGLMGGAAGL 41
SL++G +L +++ P+G VIG +GGA GL
Sbjct: 168 SLATGLRLAAVYAPIGAVIGEWVGGARGL 196
>gi|293382313|ref|ZP_06628252.1| putative M23 peptidase domain protein [Enterococcus faecalis R712]
gi|293389425|ref|ZP_06633883.1| putative M23 peptidase domain protein [Enterococcus faecalis S613]
gi|312907445|ref|ZP_07766436.1| peptidase, M23 family [Enterococcus faecalis DAPTO 512]
gi|312910063|ref|ZP_07768910.1| peptidase, M23 family [Enterococcus faecalis DAPTO 516]
gi|291080258|gb|EFE17622.1| putative M23 peptidase domain protein [Enterococcus faecalis R712]
gi|291081312|gb|EFE18275.1| putative M23 peptidase domain protein [Enterococcus faecalis S613]
gi|310626473|gb|EFQ09756.1| peptidase, M23 family [Enterococcus faecalis DAPTO 512]
gi|311289336|gb|EFQ67892.1| peptidase, M23 family [Enterococcus faecalis DAPTO 516]
Length = 1722
Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 16 SGFKLGSI----FGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGKKE 62
+G KLG++ FGP+G VIGG++G AAG + G G KE E
Sbjct: 671 AGAKLGAVAGTTFGPIGTVIGGILGTAAG-----SSFGSVLGKKLKENWPE 716
>gi|317407404|gb|EFV87367.1| hypothetical protein HMPREF0005_05331 [Achromobacter xylosoxidans
C54]
Length = 1092
Score = 37.3 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 15 SSGFKLGSIFGPVGGVIGGLMGGAAG-LYSEWDTIGGFFGSSQKEGKKE 62
S+G GS FGP+G VIG +G A G + SE ++ G SQ EG+ E
Sbjct: 301 SAGVLAGSFFGPLGVVIGSQVGAAIGTVLSEQESTGT--SRSQAEGRSE 347
>gi|323969108|gb|EGB64413.1| hypothetical protein ERHG_04812 [Escherichia coli TA007]
Length = 571
Score = 36.9 bits (84), Expect = 0.84, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 3 FLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAG-LYSEWDTIGGFFGSSQKEGKK 61
F ++K GS SG +GSIF VIG L+G A G L T+ G F S + +K
Sbjct: 432 FSSMALKVGSYAMSGSAIGSIFP----VIGSLVGSALGALVGIIMTVAGIFTSKASKIRK 487
Query: 62 EEEGVRPLEGDELAEVR 78
+ VR D L EVR
Sbjct: 488 AQGKVR----DRLEEVR 500
>gi|77458888|ref|YP_348394.1| hypothetical protein Pfl01_2663 [Pseudomonas fluorescens Pf0-1]
gi|77382891|gb|ABA74404.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 543
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 2 SFLDSSVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGKK 61
SFL + G SGF +G+ F +G ++G ++GG G+++ G F G K+ +
Sbjct: 410 SFL---LSVGGYALSGFSIGTFFPVIGNIVGAIVGGVIGVFAA--AFGYFLGGRGKKIAE 464
Query: 62 EEEGV 66
+E V
Sbjct: 465 AQEQV 469
>gi|271965069|ref|YP_003339265.1| hypothetical protein Sros_3588 [Streptosporangium roseum DSM 43021]
gi|270508244|gb|ACZ86522.1| hypothetical protein Sros_3588 [Streptosporangium roseum DSM 43021]
Length = 610
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 23/90 (25%)
Query: 26 PVGGVIGGLMGGAAGLYSEWDTI-GGFFGSSQKEGKKEEEGVRPLEGDELAEVRRQESLR 84
P GG G L GG G D + GG G + G+ EE + PL+ +RRQ++LR
Sbjct: 29 PPGGFRGALPGGEPG-----DGLTGGEPGGAPAAGESGEEALAPLQRPAALRLRRQQALR 83
Query: 85 AY-----------------EMNRIPIPARR 97
+ E R PI ARR
Sbjct: 84 QWPQQGQRGVGRGHRRDPIETGRDPIEARR 113
>gi|311105269|ref|YP_003978122.1| tape measure domain-containing protein [Achromobacter xylosoxidans
A8]
gi|310759958|gb|ADP15407.1| tape measure domain protein [Achromobacter xylosoxidans A8]
Length = 782
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 26 PVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGKKEEEGVRPLEG 71
P+G +IG ++ G ++ WD+I FFG + E KK +G L+G
Sbjct: 590 PLGRIIGLVLAGLLLIWQNWDSISKFFGETWDEFKK--KGKEALDG 633
>gi|156100839|ref|XP_001616113.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148804987|gb|EDL46386.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 5707
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 10 FGSSLSSGFKLGSIFGPV----GGVIGGLMGGAAGLY-SEWDTIGGFFGSSQKEG 59
FGS+ SG G +FG GG+ GG GL+ S + GG FGS+Q+ G
Sbjct: 2487 FGSAQQSG---GGLFGGAQQSGGGLFGGAQQSGGGLFGSAQQSGGGLFGSAQQSG 2538
>gi|78186455|ref|YP_374498.1| hypothetical protein Plut_0572 [Chlorobium luteolum DSM 273]
gi|78166357|gb|ABB23455.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 163
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 12 SSLSSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSS 55
S+++ G G+ FG +GG++ GLM G GL+ T GGF S
Sbjct: 43 SAVTLGRNAGTGFGFLGGMLCGLMTGDMGLHMLAGTTGGFMAGS 86
>gi|117920477|ref|YP_869669.1| hypothetical protein Shewana3_2032 [Shewanella sp. ANA-3]
gi|117612809|gb|ABK48263.1| conserved hypothetical protein [Shewanella sp. ANA-3]
Length = 542
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 20/109 (18%)
Query: 7 SVKFGSSLSSGFKLGSIFGPVGGVIGGLMGGAA-----GLYSEWDTIGGFFGSSQKEGKK 61
+ + GS SGF +GS F PV G I G +GGA GL+ G F S +K +
Sbjct: 409 AFQVGSYALSGFTIGSAF-PVIGNIAGAIGGAVLGIVMGLF-------GLFTSKEKRIRN 460
Query: 62 EEEGVRPLEGDELAEVRRQESLRAYEMNRIPIPARRFT--SSSLLSGVH 108
+ VR E E E L E N I AR + S LS V+
Sbjct: 461 AKSEVR-----EKIEAVCDEKLATIESNVAKIVARVHSEVESKALSAVN 504
>gi|317500213|ref|ZP_07958444.1| hypothetical protein HMPREF1026_00386 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087559|ref|ZP_08336490.1| hypothetical protein HMPREF1025_00073 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316898384|gb|EFV20424.1| hypothetical protein HMPREF1026_00386 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330400699|gb|EGG80303.1| hypothetical protein HMPREF1025_00073 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 561
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 1 MSFLDSSVKFGSSLSSGFK-----LGSIFGPVGGVIGGLMGGAAG----LYSEWDTIGGF 51
+S + +SV FG +G K LG +G GG +G ++G AAG L+ W GG
Sbjct: 178 VSIVGASVLFGMGSRAGEKAGEELLGPAYGAAGGTLGTVIGAAAGLLFLLFVLWIFKGGI 237
Query: 52 FGSSQKEGKKEEE 64
Q++ K +E
Sbjct: 238 RRQIQRDHTKGKE 250
>gi|153816464|ref|ZP_01969132.1| hypothetical protein RUMTOR_02717 [Ruminococcus torques ATCC 27756]
gi|145846206|gb|EDK23124.1| hypothetical protein RUMTOR_02717 [Ruminococcus torques ATCC 27756]
Length = 575
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 1 MSFLDSSVKFGSSLSSGFK-----LGSIFGPVGGVIGGLMGGAAG----LYSEWDTIGGF 51
+S + +SV FG +G K LG +G GG +G ++G AAG L+ W GG
Sbjct: 192 VSIVGASVLFGMGSRAGEKAGEELLGPAYGAAGGTLGTVIGAAAGLLFLLFVLWIFKGGI 251
Query: 52 FGSSQKEGKKEEE 64
Q++ K +E
Sbjct: 252 RRQIQRDHTKGKE 264
>gi|330983522|gb|EGH81625.1| hypothetical protein PLA107_00730 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 124
Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 16 SGFKLGSIFGPVGGVIGGLMGGAAGLYS 43
+G +G++ GP G +GGL+GGA G+++
Sbjct: 86 AGVAMGAVAGPAGMAVGGLVGGAIGVFA 113
>gi|302693961|ref|XP_003036659.1| hypothetical protein SCHCODRAFT_80348 [Schizophyllum commune H4-8]
gi|300110356|gb|EFJ01757.1| hypothetical protein SCHCODRAFT_80348 [Schizophyllum commune H4-8]
Length = 557
Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 15 SSGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGS 54
+ G GS FG G GGL GG A + +T GG FGS
Sbjct: 64 NQGASTGSAFGQTGATSGGLFGGGAANSNNTNTGGGLFGS 103
>gi|91976470|ref|YP_569129.1| gene transfer agent (GTA) orfg15 [Rhodopseudomonas palustris
BisB5]
gi|91682926|gb|ABE39228.1| gene transfer agent (GTA) orfg15 [Rhodopseudomonas palustris
BisB5]
Length = 1283
Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 16 SGFKLGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGFFGSSQKEGKKEEEGVRPLEGDELA 75
+G +G++FGPVG + G + G AG + +GG G + EG R + D +A
Sbjct: 9 AGGAVGALFGPVGAIAGRIAGALAGSMLDHALLGG--------GDRNVEGPRLADLDIMA 60
Query: 76 EVRRQESLRAYEMNRI 91
R Y R+
Sbjct: 61 STEGAPIPRVYGRARL 76
>gi|167588612|ref|ZP_02381000.1| hypothetical protein BuboB_24974 [Burkholderia ubonensis Bu]
Length = 217
Score = 33.9 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 20 LGSIFGPVGGVIGGLMGGAAGLYSEWDTIGGF-FGSSQKEGKK 61
LG + G +G V+ GL GG AG + E+D GF F EG +
Sbjct: 50 LGRVLGGIGNVVAGLTGGGAG-FDEYDEGDGFEFADEADEGDE 91
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.315 0.137 0.390
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,055,028,216
Number of Sequences: 14124377
Number of extensions: 82563184
Number of successful extensions: 300625
Number of sequences better than 10.0: 138
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 299661
Number of HSP's gapped (non-prelim): 890
length of query: 110
length of database: 4,842,793,630
effective HSP length: 78
effective length of query: 32
effective length of database: 3,741,092,224
effective search space: 119714951168
effective search space used: 119714951168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 76 (33.8 bits)