RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter asiaticus str. psy62] (110 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.9 bits (71), Expect = 0.039 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 13/37 (35%) Query: 62 EEEGVRPLEGDELAEVRRQESLRAYEMNRIP---IPA 95 E++ ++ L Q SL+ Y + P I A Sbjct: 18 EKQALKKL----------QASLKLYADDSAPALAIKA 44 >1vk5_A Expressed protein; structural genomics, unknown function, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A* Length = 157 Score = 27.3 bits (60), Expect = 0.81 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 70 EGDELAEVRRQESLRAYEMNRIPIPARR 97 DE + +RR E + Y M ++PIP R Sbjct: 32 VADEGSLLRRAEMYQDY-MKQVPIPTNR 58 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.137 0.390 Gapped Lambda K H 0.267 0.0579 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 951,339 Number of extensions: 41105 Number of successful extensions: 58 Number of sequences better than 10.0: 1 Number of HSP's gapped: 58 Number of HSP's successfully gapped: 6 Length of query: 110 Length of database: 5,693,230 Length adjustment: 74 Effective length of query: 36 Effective length of database: 3,899,174 Effective search space: 140370264 Effective search space used: 140370264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.4 bits)