HHsearch alignment for GI: 254781215 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=92.22 E-value=0.78 Score=23.85 Aligned_cols=108 Identities=22% Similarity=0.223 Sum_probs=64.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCC-------------------EEEEEECCHHHHHHHHHHHHHHHHHHCHHCCC
Q ss_conf 46502576597899999999999808996-------------------69998085899999999999999985500013
Q gi|254781215|r 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGI-------------------SVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140 (511)
Q Consensus 80 ~aV~sgrG~GKS~l~a~l~lw~l~~~p~~-------------------kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~ 140 (511)
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~---- 102 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLS---- 102 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCC----
T ss_conf 0037999997899999999996586643345520022444320256886599773213333006999999998604----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 44432222223334443211123578616985303575561002120267614999711102997889888888507998
Q gi|254781215|r 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220 (511)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~ 220 (511)
T Consensus 103 -------------------------------------------~~~~~~~~-kviiidead~mt~~A~nallk~lEep~~ 138 (325)
T COG0470 103 -------------------------------------------ESPLEGGY-KVVIIDEADKLTEDAANALLKTLEEPPK 138 (325)
T ss_pred -------------------------------------------CCCCCCCC-EEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf -------------------------------------------46566772-6999732032698888767543324888
Q ss_pred CEEEEEECC-CCCCCC
Q ss_conf 138998238-998765
Q gi|254781215|r 221 NRFWIMTSN-PRRLSG 235 (511)
Q Consensus 221 ~~~~i~~~n-P~~~~g 235 (511)
T Consensus 139 ~~~~il~~n~~~~il~ 154 (325)
T COG0470 139 NTRFILITNDPSKILP 154 (325)
T ss_pred CEEEEEEECCHHHCHH
T ss_conf 7169997498555647