HHsearch alignment for GI: 254781215 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=98.56 E-value=5.8e-06 Score=56.21 Aligned_cols=159 Identities=23% Similarity=0.237 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-H
Q ss_conf 845899999999999874056555421012465025765978999999999998089966999808589999999999-9
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-V 128 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~E-i 128 (511)
T Consensus 36 ~lr~yQ~~al~a~~~~~~~-~-------~~gvivlpTGaGKT~va~~~~~~~-----~~~~Lvlv~~~~L~~Q--w~~~~ 100 (442)
T COG1061 36 ELRPYQEEALDALVKNRRT-E-------RRGVIVLPTGAGKTVVAAEAIAEL-----KRSTLVLVPTKELLDQ--WAEAL 100 (442)
T ss_pred CCHHHHHHHHHHHHHHCCC-C-------CCEEEEECCCCCHHHHHHHHHHHH-----CCCEEEEECCHHHHHH--HHHHH
T ss_conf 8859999999999962225-7-------867999679998899999999982-----6988999782999999--99999
Q ss_pred HHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHH
Q ss_conf 99998550001344432222223334443211123578616985303575561002120267614999711102997889
Q gi|254781215|r 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208 (511)
Q Consensus 129 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~ 208 (511)
T Consensus 101 ~~~~~~~--------~~~g~~------~~~~~~~~~-~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~~ 163 (442)
T COG1061 101 KKFLLLN--------DEIGIY------GGGEKELEP-AKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPSY 163 (442)
T ss_pred HHHCCCC--------CCCCEE------CCCCCCCCC-CCEEEEEEHHHHHHH--HHHHHCCCCCCEEEEECCCCCCCHHH
T ss_conf 9734886--------766033------687233577-748999838976415--55540356667599975245784779
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCC-CHHHHHHH
Q ss_conf 88888850799813899823899876-55676530
Q gi|254781215|r 209 LGILGFLTERNANRFWIMTSNPRRLS-GKFYEIFN 242 (511)
Q Consensus 209 e~i~~~Lt~~g~~~~~i~~~nP~~~~-g~fy~~~~ 242 (511)
T Consensus 164 ~~~~~~~~~~~~--~LGLTATp~R~D~~~~~~l~~ 196 (442)
T COG1061 164 RRILELLSAAYP--RLGLTATPEREDGGRIGDLFD 196 (442)
T ss_pred HHHHHHHHCCCE--EEEEECCCCCCCCCCHHHHHH
T ss_conf 999997510310--467714872448775248774