HHsearch alignment for GI: 254781215 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=94.32 E-value=0.37 Score=25.93 Aligned_cols=129 Identities=16% Similarity=0.038 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC------CCEEEEEECCHHHHH
Q ss_conf 57845899999999999874056555421012465025765978999999999998089------966999808589999
Q gi|254781215|r 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP------GISVICLANSETQLK 121 (511)
Q Consensus 48 ~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p------~~kv~vtApt~~Q~~ 121 (511)
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~------------nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~ 87 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGE------------NVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNN 87 (814)
T ss_pred CCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHH
T ss_conf 0899878999999985898------------4699868999737999999999998606888888569999570788878
Q ss_pred HHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCC--------CCCE
Q ss_conf 99999999999855000134443222222333444321112357861698530357556100212026--------7614
Q gi|254781215|r 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN--------TYGM 193 (511)
Q Consensus 122 ~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~--------~~~~ 193 (511)
T Consensus 88 Di~-~rL~~~~~~~G----~~v----~vRhGDT~~~er~r~~~~PPdILiT-------TPEsL~lll~~~~~r~~l~~vr 151 (814)
T COG1201 88 DIR-RRLEEPLRELG----IEV----AVRHGDTPQSEKQKMLKNPPHILIT-------TPESLAILLNSPKFRELLRDVR 151 (814)
T ss_pred HHH-HHHHHHHHHCC----CCC----CEECCCCCHHHHHHCCCCCCCEEEE-------CHHHHHHHHCCHHHHHHHCCCC
T ss_conf 999-99999999759----844----4422878867763046999968995-------8348999836888999860780
Q ss_pred EEEECCHHCCC
Q ss_conf 99971110299
Q gi|254781215|r 194 AIINDEASGTP 204 (511)
Q Consensus 194 lvI~DEAsgI~ 204 (511)
T Consensus 152 ~VIVDEiHel~ 162 (814)
T COG1201 152 YVIVDEIHALA 162 (814)
T ss_pred EEEEEHHHHHH
T ss_conf 99951254543