HHsearch alignment for GI: 254781215 and conserved domain: COG1203

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=97.31  E-value=0.0093  Score=35.99  Aligned_cols=170  Identities=16%  Similarity=0.075  Sum_probs=87.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHH
Q ss_conf             784589999999999987405655542101246502576597899999999999808--996699980858999999999
Q gi|254781215|r   49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR--PGISVICLANSETQLKTTLWA  126 (511)
Q Consensus        49 ~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~--p~~kv~vtApt~~Q~~~ilw~  126 (511)
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~--------~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie-~~~~  264 (733)
T COG1203         194 HEGYELQEKALELILRLEKRSL--------LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIE-DMYR  264 (733)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCC--------EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHH-HHHH
T ss_conf             5113556799999873225575--------189991688871999999999975311354562899655899999-9999


Q ss_pred             HHHHHHHHCHHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCEEEEEECCCCCCCCC--HHHHCCC-----CCCEEE
Q ss_conf             9999998550001344432222223334443----2111235786169853035755610--0212026-----761499
Q gi|254781215|r  127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV----LHCSLGIDSKHYSTMCRTYSEERPD--TFVGHHN-----TYGMAI  195 (511)
Q Consensus       127 Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~e--a~~G~h~-----~~~~lv  195 (511)
T Consensus       265 r~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~v  342 (733)
T COG1203         265 RAKEIFGLFSVIGKS--LHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLV  342 (733)
T ss_pred             HHHHHHCCCCCCCCC--CCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCE
T ss_conf             998751235543310--013102556517010022588812422362045222069998557404667257788764677


Q ss_pred             EECCHHCCCHH-HHHHHHHH---HCCCCCCEEEEEECCC
Q ss_conf             97111029978-89888888---5079981389982389
Q gi|254781215|r  196 INDEASGTPDV-INLGILGF---LTERNANRFWIMTSNP  230 (511)
Q Consensus       196 I~DEAsgI~d~-i~e~i~~~---Lt~~g~~~~~i~~~nP  230 (511)
T Consensus       343 IlDE~h~~~~~~~~~~l~~~i~~l~~~g~~i-ll~SATl  380 (733)
T COG1203         343 ILDEVHLYADETMLAALLALLEALAEAGVPV-LLMSATL  380 (733)
T ss_pred             EEECHHHCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCC
T ss_conf             8742754165430899999999999689978-9992789