HHsearch alignment for GI: 254781215 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=97.31 E-value=0.0093 Score=35.99 Aligned_cols=170 Identities=16% Similarity=0.075 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHH
Q ss_conf 784589999999999987405655542101246502576597899999999999808--996699980858999999999
Q gi|254781215|r 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR--PGISVICLANSETQLKTTLWA 126 (511)
Q Consensus 49 ~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~--p~~kv~vtApt~~Q~~~ilw~ 126 (511)
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~--------~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie-~~~~ 264 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSL--------LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIE-DMYR 264 (733)
T ss_pred CCHHHHHHHHHHHHHHCCCCCC--------EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHH-HHHH
T ss_conf 5113556799999873225575--------189991688871999999999975311354562899655899999-9999
Q ss_pred HHHHHHHHCHHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCEEEEEECCCCCCCCC--HHHHCCC-----CCCEEE
Q ss_conf 9999998550001344432222223334443----2111235786169853035755610--0212026-----761499
Q gi|254781215|r 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV----LHCSLGIDSKHYSTMCRTYSEERPD--TFVGHHN-----TYGMAI 195 (511)
Q Consensus 127 Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~e--a~~G~h~-----~~~~lv 195 (511)
T Consensus 265 r~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~v 342 (733)
T COG1203 265 RAKEIFGLFSVIGKS--LHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLV 342 (733)
T ss_pred HHHHHHCCCCCCCCC--CCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCE
T ss_conf 998751235543310--013102556517010022588812422362045222069998557404667257788764677
Q ss_pred EECCHHCCCHH-HHHHHHHH---HCCCCCCEEEEEECCC
Q ss_conf 97111029978-89888888---5079981389982389
Q gi|254781215|r 196 INDEASGTPDV-INLGILGF---LTERNANRFWIMTSNP 230 (511)
Q Consensus 196 I~DEAsgI~d~-i~e~i~~~---Lt~~g~~~~~i~~~nP 230 (511)
T Consensus 343 IlDE~h~~~~~~~~~~l~~~i~~l~~~g~~i-ll~SATl 380 (733)
T COG1203 343 ILDEVHLYADETMLAALLALLEALAEAGVPV-LLMSATL 380 (733)
T ss_pred EEECHHHCCCCCHHHHHHHHHHHHHHCCCCE-EEEECCC
T ss_conf 8742754165430899999999999689978-9992789