HHsearch alignment for GI: 254781215 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=97.51 E-value=0.0063 Score=37.05 Aligned_cols=139 Identities=15% Similarity=0.051 Sum_probs=76.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24650257659789999999999980899669998085899999999999999985500013444322222233344432
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVL 158 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (511)
T Consensus 49 N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~-~~~~~~~~~Gi-r-------V~~~----TgD~~ 114 (766)
T COG1204 49 NVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKY-EEFSRLEELGI-R-------VGIS----TGDYD 114 (766)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHH-HHHHHHHHCCC-E-------EEEE----CCCCC
T ss_conf 679976788866999999999999855-983899907599999999-98666886597-7-------9996----48865
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCHHHH-CCCC-----CCEEEEECCHHCCCHH----HHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 1112357861698530357556100212-0267-----6149997111029978----8988888850799813899823
Q gi|254781215|r 159 HCSLGIDSKHYSTMCRTYSEERPDTFVG-HHNT-----YGMAIINDEASGTPDV----INLGILGFLTERNANRFWIMTS 228 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~s~~~~ea~~G-~h~~-----~~~lvI~DEAsgI~d~----i~e~i~~~Lt~~g~~~~~i~~~ 228 (511)
T Consensus 115 ~~~~~l~~~~ViVt-------T~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLS 187 (766)
T COG1204 115 LDDERLARYDVIVT-------TPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLS 187 (766)
T ss_pred CCHHHHCCCCEEEE-------CHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCCCEEHHHHHHHHHHCCCEEEEEEE
T ss_conf 55334145887997-------46786676506753334016899942101487565864022798888527551798873
Q ss_pred CCCCCCCHHH
Q ss_conf 8998765567
Q gi|254781215|r 229 NPRRLSGKFY 238 (511)
Q Consensus 229 nP~~~~g~fy 238 (511)
T Consensus 188 ATlpN~~evA 197 (766)
T COG1204 188 ATLPNAEEVA 197 (766)
T ss_pred EECCCHHHHH
T ss_conf 1168889999