HHsearch alignment for GI: 254781215 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=95.70 E-value=0.15 Score=28.40 Aligned_cols=74 Identities=16% Similarity=-0.022 Sum_probs=49.8
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 42145577756555784589999999999987405655542101246502576597899999999999808996699980
Q gi|254781215|r 35 FFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 35 ~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
T Consensus 69 ~~p~~-k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~-----~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~g~sv~f~~~ 141 (254)
T COG1484 69 SFPAK-KTFEEFDFEFQPGIDKKALEDLASLVEFFE-----RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITA 141 (254)
T ss_pred CCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-----CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEH
T ss_conf 68755-785430235885566999999999998732-----588289989999879999999999999-83984999885
Q ss_pred C
Q ss_conf 8
Q gi|254781215|r 115 N 115 (511)
Q Consensus 115 p 115 (511)
T Consensus 142 ~ 142 (254)
T COG1484 142 P 142 (254)
T ss_pred H
T ss_conf 9