HHsearch alignment for GI: 254781215 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=91.95 E-value=0.84 Score=23.65 Aligned_cols=149 Identities=18% Similarity=0.156 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
T Consensus 21 Qe~v~~~L~nal~~~ri~h-----AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C--~~Ck~I~~g-------- 85 (515)
T COG2812 21 QEHVVKTLSNALENGRIAH-----AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC--ISCKEINEG-------- 85 (515)
T ss_pred CHHHHHHHHHHHHHCCCHH-----HHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH--HHHHHHHCC--------
T ss_conf 4899999999998084233-----3651377776710499999999568898777722531--666865148--------
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHH
Q ss_conf 50001344432222223334443211123578616985303575561002120267614999711102997889888888
Q gi|254781215|r 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~ 214 (511)
T Consensus 86 ------------------~~~DviEiDaASn~g--VddiR~i~e~--v~y~P~~~ryK-VyiIDEvHMLS~~afNALLKT 142 (515)
T COG2812 86 ------------------SLIDVIEIDAASNTG--VDDIREIIEK--VNYAPSEGRYK-VYIIDEVHMLSKQAFNALLKT 142 (515)
T ss_pred ------------------CCCCCHHHHHHHCCC--HHHHHHHHHH--HCCCCCCCCCE-EEEEECHHHHHHHHHHHHHCC
T ss_conf ------------------864101136444548--6799999987--24688666641-899831876437888887511
Q ss_pred HCCCCCC-EEEEEECCCCCCCCHHHHHH
Q ss_conf 5079981-38998238998765567653
Q gi|254781215|r 215 LTERNAN-RFWIMTSNPRRLSGKFYEIF 241 (511)
Q Consensus 215 Lt~~g~~-~~~i~~~nP~~~~g~fy~~~ 241 (511)
T Consensus 143 LEEPP~hV~FIlATTe~~Kip~TIlSRc 170 (515)
T COG2812 143 LEEPPSHVKFILATTEPQKIPNTILSRC 170 (515)
T ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHCC
T ss_conf 1368667489985388676840455212