HHsearch alignment for GI: 254781215 and conserved domain: COG3972
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only].
Probab=95.24 E-value=0.052 Score=31.25 Aligned_cols=119 Identities=18% Similarity=0.079 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH---HHHHHHHHHHHHH--------HHHHCHHCCCCCCCCCCCCCCCC
Q ss_conf 576597899999999999808996699980858---9999999999999--------99855000134443222222333
Q gi|254781215|r 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSE---TQLKTTLWAEVSK--------WLSLLPNKHWFEMQSLSLHPAPW 153 (511)
Q Consensus 85 grG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~---~Q~~~ilw~Ei~k--------~~~~~~~~~~~~~~~~~~~~~~~ 153 (511)
T Consensus 184 LAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~l-v~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~ 262 (660)
T COG3972 184 LAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTL-VPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYR 262 (660)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHH-HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHH
T ss_conf 247873029887778974479986389986667888999999-9999998862488724268884357878886038899
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCC-------CCHHHHCCC-CCCEEEEECCHHCCCHHHHHHHHHHHCC
Q ss_conf 444321112357861698530357556-------100212026-7614999711102997889888888507
Q gi|254781215|r 154 YSDVLHCSLGIDSKHYSTMCRTYSEER-------PDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTE 217 (511)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~s~~~-------~ea~~G~h~-~~~~lvI~DEAsgI~d~i~e~i~~~Lt~ 217 (511)
T Consensus 263 ~~~~------~-------~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDFP~~F~~Lcf~~tkd 321 (660)
T COG3972 263 YICH------Y-------YEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDFPQSFIDLCFMVTKD 321 (660)
T ss_pred HHHC------C-------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 9842------6-------654547877406799999998642564231799424554778999999998247