HHsearch alignment for GI: 254781215 and conserved domain: COG4626
>COG4626 Phage terminase-like protein, large subunit [General function prediction only].
Probab=99.83 E-value=1.2e-15 Score=117.27 Aligned_cols=392 Identities=14% Similarity=0.061 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 58999999999998740565554210124650257659789999999999980--8996699980858999999999999
Q gi|254781215|r 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
T Consensus 63 ~PwQkFiia~l~G~~~k~T~~r--rf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~-~~F~~ar 139 (546)
T COG4626 63 EPWQKFIVAALFGFYDKQTGIR--RFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAA-NSFNPAR 139 (546)
T ss_pred CCHHHHHHHHHHHEEECCCCEE--EEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHH
T ss_conf 5189999998760350578706--888999997457855789999999998765304760899834289998-8768999
Q ss_pred HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH--HH
Q ss_conf 9998550001344432222223334443211123578616985303575561002120267614999711102997--88
Q gi|254781215|r 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VI 207 (511)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d--~i 207 (511)
T Consensus 140 ~mv~~~~~l--------~~~~-~~~~~s~~i~~~~~~s~--ik~~---aa~~~~~Dg~~~---~~~I~DEih~f~~~~~~ 202 (546)
T COG4626 140 DMVKRDDDL--------RDLC-NVQTHSRTITHRKTDST--IKAV---AADPNTVDGLNS---VGAIIDELHLFGKQEDM 202 (546)
T ss_pred HHHHHCCCH--------HHHC-CCCCCEEEEEECCCCEE--EEEH---HCCCCCCCCCCC---CEEEEEHHHHHCCHHHH
T ss_conf 998737213--------3320-65454048986155111--3301---048875567876---54887637541678999
Q ss_pred HHHHHHHHCCC-CCCEEEEEECCCCCCCCHHHHHHHCCC---C----CCEEEEEC---------------CCCCCCCC--
Q ss_conf 98888885079-981389982389987655676530352---4----74179840---------------43367789--
Q gi|254781215|r 208 NLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL---D----DWKRFQID---------------TRTVEGID-- 262 (511)
Q Consensus 208 ~e~i~~~Lt~~-g~~~~~i~~~nP~~~~g~fy~~~~~~~---~----~w~~~~i~---------------~~~~p~~~-- 262 (511)
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT-~g~~~~g~~~q~~~y~k~vl~g~~~d~~~f~~i~e~Dd~~e~~dpe~w~kaNPnlg~s 281 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITT-SGDPPAGVFKQKLQYAKDVLDGKIKDPHFFPVIYELDEEGEHDDPENWAKANPNLGVS 281 (546)
T ss_pred HHHHHHHHCCCCCCEEEEEEC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCE
T ss_conf 999974201576763999966-8988741899999999998669878821079999768820003867774308876514
Q ss_pred --HHHHHH-HHHHC--CCCHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHC--CCCCCCCCEEEEEEECCCCCCCCEE-E
Q ss_conf --778999-99751--89801354443175666678737559999886407--6531899708999623334784179-9
Q gi|254781215|r 263 --PSFHEG-IIARY--GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAEEGGDNTV-V 334 (511)
Q Consensus 263 --~~~ie~-~~~~~--geds~~~r~evlgeFp~~~~~~~i~~~~ie~a~~r--~~~~~~~~~~viGvDVAr~G~D~sv-i 334 (511)
T Consensus 282 v~~~~l~s~~~ka~~~~q~~~dF~tK~lNi~~~~-~~~~~~~~~w~~~~~~~lde~~~~gq~c~~G~Dls~~~D~ts~al 360 (546)
T COG4626 282 VDEAFLYSEYRKARNAPQEARDFMTKHLNIWIGA-SDAWFGADFWEQQGRTVLDEILLRGQVCYGGIDLSGLDDLTSMAL 360 (546)
T ss_pred EEHHHHHHHHHHHHCCCHHCHHHHHCCCCEEECH-HHCCCCHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCCCCCCEEE
T ss_conf 2077777699987318111227775123315100-102468689997314456535514866899733234555541068
Q ss_pred EEEC--CCEE-EEEEE-------------------C-----------CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 9822--7558-99873-------------------2-----------778988999999999986188829980068763
Q gi|254781215|r 335 VLRR--GPVI-EHLFD-------------------W-----------SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA 381 (511)
Q Consensus 335 ~~r~--G~~v-~~~~~-------------------~-----------~~~d~~~~a~~i~~~~~~~~~~~i~iD~~GvG~ 381 (511)
T Consensus 361 ~f~~~~~~~~i~~~h~wv~~~~~~~~k~~~~~~~ew~k~G~lTit~~~~id~~~I~ew~~~~~~~~~i~~v~~D~~g~-~ 439 (546)
T COG4626 361 VGRYRETDEWIGWGHAWVHRAAVKRRKSEAPRLQEWVKAGDLTITRRDLIDYAEIVEWFMEIREKFLIKLVGFDPSGA-G 439 (546)
T ss_pred EEECCCCCEEEEECCCCCHHHHCCCHHHCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCH-H
T ss_conf 875378762788424551243113201024668999975927973787313899999999998737851885564432-8
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHCCCEEEECCCCEEEEEECHH
Q ss_conf 6889898649827984277776640255227999999999999708999-818999998579679987998499984125
Q gi|254781215|r 382 RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI-NHSGLIQNLKSLKSFIVPNTGELAIESKRV 460 (511)
Q Consensus 382 gV~d~L~~~g~~v~~v~~~~~~~~~~~y~N~rae~~~~~re~l~~g~l~-~d~~l~~el~~~~~~~~~~~gki~ie~Kkk 460 (511)
T Consensus 440 ~~~~~l~~~g~~lv~i~Q~~~--------~l-~~~~k~~e~~~~~g~i~~~dnp~m~wcv~Nv~~~~~~n~~~~~--kk~ 508 (546)
T COG4626 440 EFRDALAEAGIKVVGIPQGFK--------KL-SGAIKTIERKLAEGVLVHGDNPLMEWCVGNVVVEEKGNAIIIT--KKV 508 (546)
T ss_pred HHHHHHHHCCCCEEECCCHHH--------HH-CCHHHHHHHHHHCCCEEECCCHHHHHHHCCEEEEECCCCCCCC--CCC
T ss_conf 899999847995434450055--------54-7426789999866958978970787753107999628864010--024
Q ss_pred HCCCCCCHHHHHHHHHC
Q ss_conf 48999898999999975
Q gi|254781215|r 461 KGAKSTDYSDGLMYTFA 477 (511)
Q Consensus 461 rg~~SPD~ADAl~l~fa 477 (511)
T Consensus 509 ~~~~KID~~~A~v~A~~ 525 (546)
T COG4626 509 SGNGKIDPFMALVNAVS 525 (546)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 77677479999999999