HHsearch alignment for GI: 254781215 and conserved domain: PRK00254
>PRK00254 ski2-like helicase; Provisional.
Probab=98.11 E-value=0.00018 Score=46.75 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 45899999999999874056555421012465025765978999999999998089966999808589999999999999
Q gi|254781215|r 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK 130 (511)
Q Consensus 51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k 130 (511)
T Consensus 24 l~p~Q~e~l~~---g~~~g~--------NllvsaPT~sGKTlvAElail~~~l~-~~~k~iyi~P~kALa~EK~-~~f~~ 90 (717)
T PRK00254 24 LYPPQAEALTS---GVLEGK--------NLLIAIPTASGKTLIAEIAMVNKLLR-EGGKAVYLVPLKALAEEKF-REFKD 90 (717)
T ss_pred CCHHHHHHHHH---HHCCCC--------CEEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHH-HHHHH
T ss_conf 68999999874---233698--------18998998874899999999999985-2992999926799999999-99987
Q ss_pred HHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCC------CCCEEEEECCHHCCC
Q ss_conf 99855000134443222222333444321112357861698530357556100212026------761499971110299
Q gi|254781215|r 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN------TYGMAIINDEASGTP 204 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~------~~~~lvI~DEAsgI~ 204 (511)
T Consensus 91 ~~~~g-----~~V~---~~tGd~--~~~~~~l--~~~d-IiV~------T~Ek~dsl~r~~~~~l~~i~lvViDEiH~ig 151 (717)
T PRK00254 91 WEVLG-----LRVA---MATGDY--DSKDEWL--GKYD-IIIA------TAEKFDSLLRHGSSWIKDVKLLVADEIHLIG 151 (717)
T ss_pred HHHCC-----CEEE---EEECCC--CCCCCCC--CCCC-EEEE------CHHHHHHHHHCCHHHHHCCCEEEEECEEECC
T ss_conf 77449-----8898---974898--8870104--6899-9998------8899999997162565326989997607888
Q ss_pred H----HHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 7----889888888507998138998238
Q gi|254781215|r 205 D----VINLGILGFLTERNANRFWIMTSN 229 (511)
Q Consensus 205 d----~i~e~i~~~Lt~~g~~~~~i~~~n 229 (511)
T Consensus 152 D~~RG~~lE~~l~~l~~-~~q--iIgLSA 177 (717)
T PRK00254 152 SRDRGATLEFILTHMLG-RAQ--IIGLSA 177 (717)
T ss_pred CCCCHHHHHHHHHHHHC-CCE--EEEEEE
T ss_conf 98740999999995100-366--999963