HHsearch alignment for GI: 254781215 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=96.90 E-value=0.025 Score=33.24 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=66.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE-EEECCHHHHHH
Q ss_conf 56555784589999999999987405655542101246502576597899999999999808996699-98085899999
Q gi|254781215|r 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI-CLANSETQLKT 122 (511)
Q Consensus 44 ~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~-vtApt~~Q~~~ 122 (511)
T Consensus 14 ~l~di~g----~~~~~~~L~~~i~~~~---~ph---lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~i-d 82 (318)
T PRK00440 14 SLDEVVG----QEEIVERLKSFVKEKN---MPH---LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGI-D 82 (318)
T ss_pred CHHHHCC----CHHHHHHHHHHHHCCC---CCE---EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCH-H
T ss_conf 8999419----6999999999998799---866---988895998899999999999769864347689516456671-7
Q ss_pred HHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHC
Q ss_conf 99999999998550001344432222223334443211123578616985303575561002120267614999711102
Q gi|254781215|r 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202 (511)
Q Consensus 123 ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsg 202 (511)
T Consensus 83 ~vr~~i~~~~~~~---------------------------------------------~--~-~-~~~-~kiiiiDE~d~ 112 (318)
T PRK00440 83 VIRNKIKEFARTA---------------------------------------------P--V-G-GAP-FKIIFLDEADN 112 (318)
T ss_pred HHHHHHHHHHHHC---------------------------------------------C--C-C-CCC-EEEEEEECCCC
T ss_conf 8999999999726---------------------------------------------7--7-8-997-38999868553
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 997889888888507998138998238
Q gi|254781215|r 203 TPDVINLGILGFLTERNANRFWIMTSN 229 (511)
Q Consensus 203 I~d~i~e~i~~~Lt~~g~~~~~i~~~n 229 (511)
T Consensus 113 l~~~aq~aL~~~mE~~~~~~~fil~~n 139 (318)
T PRK00440 113 LTSDAQQALRRTMEMYSQTTRFILSCN 139 (318)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 225567888764310566625886348