HHsearch alignment for GI: 254781215 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=96.90 E-value=0.032 Score=32.62 Aligned_cols=76 Identities=14% Similarity=0.078 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC--------CCEEEEEEC
Q ss_conf 565557845899999999999874056555421012465025765978999999999998089--------966999808
Q gi|254781215|r 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--------GISVICLAN 115 (511)
Q Consensus 44 ~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p--------~~kv~vtAp 115 (511)
T Consensus 100 ~~~Gf~~PTpIQ~~aIP~iL~----Gk--------Dvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~P 167 (472)
T PRK01297 100 HDLGFPYCTPIQAQVLGYTLA----GH--------DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAP 167 (472)
T ss_pred HHCCCCCCCHHHHHHHHHHHC----CC--------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECC
T ss_conf 977999999999999999976----99--------889989998679999999999999717751011368952999879
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 58999999999999999
Q gi|254781215|r 116 SETQLKTTLWAEVSKWL 132 (511)
Q Consensus 116 t~~Q~~~ilw~Ei~k~~ 132 (511)
T Consensus 168 TRELa~QI~-~~~~~L~ 183 (472)
T PRK01297 168 TRELVVQIA-KDAAALT 183 (472)
T ss_pred CHHHHHHHH-HHHHHHH
T ss_conf 999999999-9999974