HHsearch alignment for GI: 254781215 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.28 E-value=0.0092 Score=36.01 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=79.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 65557845899999999999874056555421012465025765978999999999998089966999808589999999
Q gi|254781215|r 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124 (511)
Q Consensus 45 ~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~il 124 (511)
T Consensus 15 f~dvvg----Q~~v~~~L~n~i~~~~i~h-----ayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~--C~----~C 79 (541)
T PRK05563 15 FEDVVG----QEHITTTLKNQIINNRIAH-----AYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNE--CE----IC 79 (541)
T ss_pred HHHHCC----CHHHHHHHHHHHHCCCCCE-----EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CH----HH
T ss_conf 766248----4999999999998499320-----453038799589999999999957999888985751--48----89
Q ss_pred HHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCC
Q ss_conf 99999999855000134443222222333444321112357861698530357556100212026761499971110299
Q gi|254781215|r 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204 (511)
Q Consensus 125 w~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~ 204 (511)
T Consensus 80 -~~i----~~g~~~Dv~Eidaa-----------------s~~g--vd~iR~~~~~--~~~~p~~~~~-Kv~IiDEvhmls 132 (541)
T PRK05563 80 -KKI----NEGLLMDVIEIDAA-----------------SNNG--VDDIREIIEN--VKYPPQEGKY-KVYIMDEVHMLS 132 (541)
T ss_pred -HHH----HCCCCCCEEEECCC-----------------CCCC--HHHHHHHHHH--CEECCCCCCE-EEEEEECCCCCC
T ss_conf -998----56898873662444-----------------4478--8999999976--1048767870-599997723389
Q ss_pred HHHHHHHHHHHCCCCCC-EEEEEECCCCCCCCHHHHHHH
Q ss_conf 78898888885079981-389982389987655676530
Q gi|254781215|r 205 DVINLGILGFLTERNAN-RFWIMTSNPRRLSGKFYEIFN 242 (511)
Q Consensus 205 d~i~e~i~~~Lt~~g~~-~~~i~~~nP~~~~g~fy~~~~ 242 (511)
T Consensus 133 ~~a~nallKtlEePp~~~~Filatte~~ki~~tI~SRcq 171 (541)
T PRK05563 133 QGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQ 171 (541)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHEE
T ss_conf 999999999985487775699976984427455674213