HHsearch alignment for GI: 254781215 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=93.20 E-value=0.58 Score=24.67 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
T Consensus 21 q~~~~~~l~~~~~~~~~~~-a----~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~--c~~c-----~~i~----- 83 (705)
T PRK05648 21 QTHVLKALINALDNQRLHH-A----YLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGE--CSVC-----REID----- 83 (705)
T ss_pred HHHHHHHHHHHHHCCCCCC-E----EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CHHH-----HHHH-----
T ss_conf 1999999999997098630-4----65007898889899999999867789998897877--6004-----6662-----
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHH
Q ss_conf 50001344432222223334443211123578616985303575561002120267614999711102997889888888
Q gi|254781215|r 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~ 214 (511)
T Consensus 84 ----------------~~~~~d~~e~d~as~~~--v~~~r~~~-~~-~~~~p~~~~~k-v~~idevhmls~~~fnallkt 142 (705)
T PRK05648 84 ----------------EGRFVDLIEVDAASRTK--VEDTRELL-DN-VQYAPTRGRYK-VYLIDEVHMLSSHSFNALLKT 142 (705)
T ss_pred ----------------CCCCCCEEEECCCCCCC--HHHHHHHH-HH-CCCCCCCCCEE-EEEEEHHHHCCHHHHHHHHHH
T ss_conf ----------------48977634451554478--89999999-85-55177677457-999842654179999999874
Q ss_pred HCCCCCCE-EEEEECCCCCCCCHHHHHH
Q ss_conf 50799813-8998238998765567653
Q gi|254781215|r 215 LTERNANR-FWIMTSNPRRLSGKFYEIF 241 (511)
Q Consensus 215 Lt~~g~~~-~~i~~~nP~~~~g~fy~~~ 241 (511)
T Consensus 143 leepp~~v~f~~att~~~k~p~t~~src 170 (705)
T PRK05648 143 LEEPPPHVKFLLATTDPQKLPVTILSRC 170 (705)
T ss_pred CCCCCCCEEEEEECCCHHHCCHHHHHHH
T ss_conf 0479754599984287353758999766