HHsearch alignment for GI: 254781215 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=96.60 E-value=0.053 Score=31.22 Aligned_cols=152 Identities=15% Similarity=0.128 Sum_probs=72.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24650257659789999999999980899669998085899999999999999985500013444322222233344432
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVL 158 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (511)
T Consensus 24 A~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~--~-------~~~~HPD~~~i~pe~~---~~~I~IdqI 91 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQL--L-------AAGSHPDNFVLEPEEA---DKPIKVDQV 91 (328)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH--H-------HCCCCCCEEEEECCCC---CCCCCHHHH
T ss_conf 464479998679999999999984899999899988889999--8-------7589998799842666---776979999
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEE-EECCCCCCCCHH
Q ss_conf 1112357861698530357556100212026761499971110299788988888850799813899-823899876556
Q gi|254781215|r 159 HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI-MTSNPRRLSGKF 237 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i-~~~nP~~~~g~f 237 (511)
T Consensus 92 ---------------R~l~--~~~~~~~~~g~~K-V~iI~~Ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lLpTI 153 (328)
T PRK05707 92 ---------------RELV--SFVVQTAQLGGRK-VVLIEPAEAMNRNAANALLKSLEEPSGQTVLLLISHQPSRLLPTI 153 (328)
T ss_pred ---------------HHHH--HHHHHCCCCCCCE-EEEEEHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCHHHH
T ss_conf ---------------9999--9983176678957-999502877389999999998507898759998609934482588
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 76530352474179840433677897789999975
Q gi|254781215|r 238 YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272 (511)
Q Consensus 238 y~~~~~~~~~w~~~~i~~~~~p~~~~~~ie~~~~~ 272 (511)
T Consensus 154 ~SRCq~-------~~~-----~~p~~e~~~~~L~~ 176 (328)
T PRK05707 154 KSRCQQ-------LAC-----PLPSNEPSLQWLQQ 176 (328)
T ss_pred HHCCEE-------EEC-----CCCCHHHHHHHHHH
T ss_conf 741413-------348-----99899999999997