HHsearch alignment for GI: 254781215 and conserved domain: PRK07399
>PRK07399 DNA polymerase III subunit delta'; Validated.
Probab=92.83 E-value=0.62 Score=24.47 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=50.4
Q ss_pred CCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 67614999711102997889888888507998138998238998765567653035247417984043367789778999
Q gi|254781215|r 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268 (511)
Q Consensus 189 ~~~~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~~~~~~~~w~~~~i~~~~~p~~~~~~ie~ 268 (511)
T Consensus 123 ~~~-kVvII~~ae~m~~~AaNaLLKtLEEP~~~~fILit~~~~~lLpTI~SRCQ~---------i~F---~~l~~~~i~~ 189 (314)
T PRK07399 123 APR-KVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQI---------IPF---YRLSDEQLEQ 189 (314)
T ss_pred CCC-EEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHCCCEE---------EEC---CCCCHHHHHH
T ss_conf 884-799988978719999999998614787856999979936491466418756---------338---9989999999
Q ss_pred HHHHCCCC
Q ss_conf 99751898
Q gi|254781215|r 269 IIARYGLD 276 (511)
Q Consensus 269 ~~~~~ged 276 (511)
T Consensus 190 ~L~~~~~~ 197 (314)
T PRK07399 190 VLKRLGDN 197 (314)
T ss_pred HHHHCCCC
T ss_conf 99971664