HHsearch alignment for GI: 254781215 and conserved domain: PRK08853
>PRK08853 DNA polymerase III subunits gamma and tau; Validated.
Probab=96.00 E-value=0.11 Score=29.16 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
T Consensus 21 Q~~v~~~L~nal~~~rl~h-----aylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C--~----~C-~~i~----~ 84 (717)
T PRK08853 21 QSHVLTALENALAHNRLHH-----AYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQC--A----TC-KEID----E 84 (717)
T ss_pred CHHHHHHHHHHHHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC--C----CH-HHHH----C
T ss_conf 5999999999997099740-----5761088988898999999998678999999978887--0----26-7674----4
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHH
Q ss_conf 50001344432222223334443211123578616985303575561002120267614999711102997889888888
Q gi|254781215|r 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~ 214 (511)
T Consensus 85 -----------------g~~~d~~EiDaAs~~~--vdd~rel~-~~-~~y~p~~~~yK-vyiiDEvHmls~~afnAlLKt 142 (717)
T PRK08853 85 -----------------GRFVDLLEIDAASRTK--VEDTRELL-DN-VQYKPARGRFK-VYLIDEVHMLSRHSFNALLKT 142 (717)
T ss_pred -----------------CCCCCEEEECCCCCCC--HHHHHHHH-HH-CCCCCCCCCEE-EEEEECHHHCCHHHHHHHHHH
T ss_conf -----------------7877524540565678--89999999-85-55488778547-999830544389999999876
Q ss_pred HCCCCCCE-EEEEECCCCCCCCHHHHHH
Q ss_conf 50799813-8998238998765567653
Q gi|254781215|r 215 LTERNANR-FWIMTSNPRRLSGKFYEIF 241 (511)
Q Consensus 215 Lt~~g~~~-~~i~~~nP~~~~g~fy~~~ 241 (511)
T Consensus 143 lEEPP~hv~FilaTT~~~kip~TilSRc 170 (717)
T PRK08853 143 LEEPPEYVKFLLATTDPQKLPVTILSRC 170 (717)
T ss_pred HCCCCCCEEEEEECCCHHHCCHHHHHHH
T ss_conf 0378756489984387343738898765