HHsearch alignment for GI: 254781215 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=97.52 E-value=0.002 Score=40.23 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=54.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-------CCEEEEEECCHH
Q ss_conf 5557845899999999999874056555421012465025765978999999999998089-------966999808589
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-------GISVICLANSET 118 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p-------~~kv~vtApt~~ 118 (511)
T Consensus 19 ~G~~~PTpIQ~~aIP~iL~G------r------Dvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aLIL~PTRE 86 (457)
T PRK10590 19 QGYREPTPIQQQAIPAVLEG------R------DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86 (457)
T ss_pred CCCCCCCHHHHHHHHHHHCC------C------CEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHH
T ss_conf 79999999999999999779------9------88998898118999999999999863676544568824999768799
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999998
Q gi|254781215|r 119 QLKTTLWAEVSKWLS 133 (511)
Q Consensus 119 Q~~~ilw~Ei~k~~~ 133 (511)
T Consensus 87 LA~Qi-~~~~~~l~~ 100 (457)
T PRK10590 87 LAAQI-GENVRDYSK 100 (457)
T ss_pred HHHHH-HHHHHHHCC
T ss_conf 99999-999997425