HHsearch alignment for GI: 254781215 and conserved domain: PRK11192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=97.52 E-value=0.0032 Score=38.91 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH----CC-CCEEEEEECCHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980----89-966999808589999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST----RP-GISVICLANSETQLK 121 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~----~p-~~kv~vtApt~~Q~~ 121 (511)
T Consensus 22 g~~~pT~IQ~~aIp~il~g------~------dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LIl~PTrELa~ 89 (417)
T PRK11192 22 GYTRPTAIQAEAIPPALDG------R------DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAM 89 (417)
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHH
T ss_conf 9999999999999999779------9------889989998679999999999998752103689964999947199999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254781215|r 122 TTLWAEVSKWLS 133 (511)
Q Consensus 122 ~ilw~Ei~k~~~ 133 (511)
T Consensus 90 Qi-~~~~~~l~~ 100 (417)
T PRK11192 90 QV-ADQARELAK 100 (417)
T ss_pred HH-HHHHHHHHC
T ss_conf 99-999998640