HHsearch alignment for GI: 254781215 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=97.34 E-value=0.0038 Score=38.43 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Q ss_conf 555784589999999999987405655542101246502576597899999999999808-9966999808589999999
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTL 124 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~-p~~kv~vtApt~~Q~~~il 124 (511)
T Consensus 24 ~Gf~~PTpIQ~~aIP~iL~G------k------Dvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTRELA~QV- 90 (629)
T PRK11634 24 LGYEKPSPIQAECIPHLLNG------R------DVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQV- 90 (629)
T ss_pred CCCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH-
T ss_conf 79999999999999999679------9------8899788847899999999999866236898689978998999999-
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254781215|r 125 WAEVSKWLS 133 (511)
Q Consensus 125 w~Ei~k~~~ 133 (511)
T Consensus 91 ~~~~~~l~~ 99 (629)
T PRK11634 91 AEAMTDFSK 99 (629)
T ss_pred HHHHHHHHH
T ss_conf 999999972