HHsearch alignment for GI: 254781215 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=96.77 E-value=0.04 Score=31.97 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
T Consensus 21 Q~~v~~~l~na~~~~r~~h-----aylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~-~C-~~i----~~ 89 (721)
T PRK12323 21 QEHVVRALTHALEQQRLHH-----AYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCR-AC-TEI----DA 89 (721)
T ss_pred CHHHHHHHHHHHHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-HH-HHH----HC
T ss_conf 5999999999997199754-----4750279988898999999999768998667898788787765-46-877----56
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHH
Q ss_conf 50001344432222223334443211123578616985303575561002120267614999711102997889888888
Q gi|254781215|r 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~ 214 (511)
T Consensus 90 -----------------g~~~d~~EiDaas~~~--v~~~r~l~~-~-~~y~P~~~~~-KvyiiDevhmls~~afnalLKt 147 (721)
T PRK12323 90 -----------------GRFVDYIEMDAASNRG--VDEMAQLLD-Q-AVYAPTAGRF-KVYMIDEVHMLTNHAFNAMLKT 147 (721)
T ss_pred -----------------CCCCCEEEEECCCCCC--HHHHHHHHH-H-CCCCCCCCCE-EEEEEECCCCCCHHHHHHHHHH
T ss_conf -----------------8987647743676788--899999998-5-4558876644-6999854000589999999984
Q ss_pred HCCCCCCEE-EEEECCCCCCCCHHHH
Q ss_conf 507998138-9982389987655676
Q gi|254781215|r 215 LTERNANRF-WIMTSNPRRLSGKFYE 239 (511)
Q Consensus 215 Lt~~g~~~~-~i~~~nP~~~~g~fy~ 239 (511)
T Consensus 148 lEePP~hv~FilaTT~~~Kip~TilS 173 (721)
T PRK12323 148 LEEPPPHVKFILATTDPQKIPVTVLS 173 (721)
T ss_pred HCCCCCCEEEEEECCCHHHCCHHHHH
T ss_conf 01797553899943863448588987