HHsearch alignment for GI: 254781215 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=93.03 E-value=0.61 Score=24.52 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHCCCCEEE---EEECCCCHHHHHHHHHCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 861888299---8006876368898986498279842777766-402552279999999999997089998189999985
Q gi|254781215|r 365 EKYRPDAII---IDANNTGARTCDYLEMLGYHVYRVLGQKRAV-DLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLK 440 (511)
Q Consensus 365 ~~~~~~~i~---iD~~GvG~gV~d~L~~~g~~v~~v~~~~~~~-~~~~y~N~rae~~~~~re~l~~g~l~~d~~l~~el~ 440 (511)
T Consensus 310 ~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a-~p~-----~~~~~ilG~~~~~~~~~~~~~~ 383 (388)
T PRK12723 310 SPFSYKTVIFTKLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISIA-EPL-----TFIKKINGYRISDDAEFIRKLK 383 (388)
T ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCC-CHH-----HHHHHHHCCCCCCHHHHHHHHH
T ss_conf 2799984999832278986699999999888869993899683020338-999-----9999984871454699999985
Q ss_pred CCC
Q ss_conf 796
Q gi|254781215|r 441 SLK 443 (511)
Q Consensus 441 ~~~ 443 (511)
T Consensus 384 ~~~ 386 (388)
T PRK12723 384 SKS 386 (388)
T ss_pred HCC
T ss_conf 045