HHsearch alignment for GI: 254781215 and conserved domain: PRK12723

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=93.03  E-value=0.61  Score=24.52  Aligned_cols=73  Identities=11%  Similarity=0.143  Sum_probs=43.3

Q ss_pred             HHCCCCEEE---EEECCCCHHHHHHHHHCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             861888299---8006876368898986498279842777766-402552279999999999997089998189999985
Q gi|254781215|r  365 EKYRPDAII---IDANNTGARTCDYLEMLGYHVYRVLGQKRAV-DLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLK  440 (511)
Q Consensus       365 ~~~~~~~i~---iD~~GvG~gV~d~L~~~g~~v~~v~~~~~~~-~~~~y~N~rae~~~~~re~l~~g~l~~d~~l~~el~  440 (511)
T Consensus       310 ~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~a-~p~-----~~~~~ilG~~~~~~~~~~~~~~  383 (388)
T PRK12723        310 SPFSYKTVIFTKLDETTCVGNLISLIHEMRKEVSYVTDGQIVPHNISIA-EPL-----TFIKKINGYRISDDAEFIRKLK  383 (388)
T ss_pred             CCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCC-CHH-----HHHHHHHCCCCCCHHHHHHHHH
T ss_conf             2799984999832278986699999999888869993899683020338-999-----9999984871454699999985


Q ss_pred             CCC
Q ss_conf             796
Q gi|254781215|r  441 SLK  443 (511)
Q Consensus       441 ~~~  443 (511)
T Consensus       384 ~~~  386 (388)
T PRK12723        384 SKS  386 (388)
T ss_pred             HCC
T ss_conf             045